Examples of RunItemMs2Params


Examples of com.infoclinika.mssharing.model.read.DetailsReader.ExperimentSearchItem.ExperimentSearchParamsItem.RunItemMs2Params

    private ExperimentSearchParamsItem getExperimentSearchItemsParams(ExperimentSearch run) {
        final ExperimentSearchParamsData p = run.getData().getParams();
        final ExperimentSearchParamsData.CometParamsData cP = p.getCometParams();
        final ExperimentSearchParamsData.Ms2ProcessorParamsData mP = p.getMs2ProcessorParams();
        return new ExperimentSearchParamsItem(new RunItemMs2Params(mP.getMaxCharge(), mP.getIsolationWidth()),
                new RunItemCometParams(cP.getSequestSearchDB().getId(), cP.getMaxPrecursorCharge(), cP.getPeptideMassTolerance(), cP.getPeptideMassUnits(), cP.getMassTypeParent(),
                        cP.getMassTypeFragment(), cP.getPrecursorToleranceType(), cP.getSearchEnzymeNumber(), cP.getNumEnzymeTermini(), newLinkedList(cP.getModificationParams())));
    }
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