Examples of ReadFeatureCodec

Examples of net.sf.cram.encoding.read_features.ReadFeatureCodec

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  public BitCodec<List<ReadFeature>> buildCodec(CramHeader header,
      CompressionHeader compression,
      SequenceBaseProvider referenceBaseProvider,
      DefaultMutableTreeNode parent) throws CramException {

    ReadFeatureCodec codec = new ReadFeatureCodec();
    DefaultMutableTreeNode node = buildNode(codec, "Variations codec");
    parent.add(node);

    codec.inReadPosCodec = register(
        bitCodecFactory.buildLongCodec(compression
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