Examples of ProgressMeter

flex2.tools.oem.ProgressMeter
The ProgressMeter interface lets you get periodic updates from the compiler about the compilation progress.
Providing a progress meter to the compiler is optional. If you want to know about compilation progress, you must implement this interface and provide an instance of the implementation to the Application.setProgressMeter() and/or Library.setProgressMeter() methods. @version 2.0.1 @author Clement Wong
infrastructure.ProgressMeter
net.sourceforge.align.progress.ProgressMeter

Represents progress meter. Processes inform it about task progress, and it notifies its observers via {@link ProgressManager}.

After creating ProgressMeter it needs to be registered via {@link ProgressManager#registerProgressMeter(ProgressMeter)} method. After task completes it must be unregistered via {@link ProgressManager#unregisterProgressMeter(ProgressMeter)} method.

To improve performance observer are not notified of every completed task, maximum number of notifications is controlled by steps parameter.

TODO: maybe add parent progress meter to have a hierarchy.
@author loomchild
org.broadinstitute.gatk.utils.progressmeter.ProgressMeter
A meter measuring progress on a calculation through a set of genomic regions that can print a few key metrics to a logger and optionally to a file The key information for assessing progress is a set of genome locs describing the total set of regions we will process. Whenever (at reasonable intervals) the processing unit can called notifyOfProgress and this logger may, depending on the metering delay, print a log message with the following metrics: -- Number of processed X (X = processing units) -- Runtime per.1M X -- Percent of regions to be processed completed -- The estimated total runtime based on previous performance -- The estimated time remaining for the entire process The optional file log an expanded set of metrics in tabular format suitable for subsequent analysis in R. This class is -- and MUST BE -- thread-safe for use in the GATK. Multiple independent threads executing processors will be calling notifyOfProgress() simultaneously and this class does (and MUST) properly sort out the timings of logs without interlacing outputs because of these threads. Consequently, the fundamental model for when to print the logs is time based. We basically print a meter message every X seconds, minutes, hours, whatever is appropriate based on the estimated remaining runtime. @author depristo @since 2010 maybe, but written in 09/12 for clarity

Examples of infrastructure.ProgressMeter

    startLoadingProject();
  }


  private void startLoadingProject() {
    ProjectParser parser=new PascalPlusDFMProjectParserImpl();
    parser.loadProject(new ProgressMeter() {
      
      @Override
      public void setProgressValue(float value) {
        final int deltaInteger=Math.round(value-getProgressMinimum());
        SwingUtilities.invokeLater(new Runnable() {

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Examples of net.sourceforge.align.progress.ProgressMeter

      List<String> targetSegmentList) {


    Matrix<Float> forwardMatrix = matrixFactory.createMatrix(
        sourceSegmentList.size() + 1, targetSegmentList.size() + 1);
    
    ProgressMeter progress = new ProgressMeter("Forward-Backward Align", forwardMatrix.getSize() * 2);
    ProgressManager.getInstance().registerProgressMeter(progress);
    
    MatrixIterator<Float> forwardIterator = forwardMatrix.getIterator();
    while(forwardIterator.hasNext()) {
      forwardIterator.next();
      int x = forwardIterator.getX();
      int y = forwardIterator.getY();
      float data = createForwardData(x, y, sourceSegmentList, 
          targetSegmentList, forwardMatrix);
      forwardMatrix.set(x, y, data);


      progress.completeTask();
    }
    
    Matrix<Float> backwardMatrix = matrixFactory.createMatrix(
        sourceSegmentList.size() + 1, targetSegmentList.size() + 1);
    MatrixIterator<Float> backwardIterator = backwardMatrix.getIterator();


    backwardIterator.afterLast();
    while(backwardIterator.hasPrevious()) {
      backwardIterator.previous();
      int x = backwardIterator.getX();
      int y = backwardIterator.getY();
      float data = createBackwardData(x, y, sourceSegmentList, 
          targetSegmentList, backwardMatrix);
      backwardMatrix.set(x, y, data);
      
      progress.completeTask();
    }


    List<Alignment> alignmentList = new ArrayList<Alignment>();
    
    float totalScore = forwardMatrix.get(sourceSegmentList.size(),

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Examples of net.sourceforge.align.progress.ProgressMeter

      List<String> targetSegmentList) {
    
    Matrix<ViterbiData> matrix = matrixFactory.createMatrix(
        sourceSegmentList.size() + 1, targetSegmentList.size() + 1);


    ProgressMeter progress = new ProgressMeter("Viterbi Align", matrix.getSize());
    ProgressManager.getInstance().registerProgressMeter(progress);
    
    MatrixIterator<ViterbiData> iterator = matrix.getIterator();
    while(iterator.hasNext()) {
      iterator.next();
      int x = iterator.getX();
      int y = iterator.getY();
      ViterbiData data = createData(x, y,  sourceSegmentList, 
          targetSegmentList, matrix);
      matrix.set(x, y, data);
      
      progress.completeTask();
    }
    
    List<Alignment> alignmentList = backtrace(sourceSegmentList,
        targetSegmentList, matrix);

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Examples of org.broadinstitute.gatk.utils.progressmeter.ProgressMeter

            allCreatedTraversalEngines.add(traversalEngine);
            availableTraversalEngines.add(traversalEngine);
        }


        // Create the progress meter, and register it with the analysis engine
        engine.registerProgressMeter(new ProgressMeter(progressLogFile,
                availableTraversalEngines.peek().getTraversalUnits(),
                engine.getRegionsOfGenomeBeingProcessed()));


        // Now that we have a progress meter, go through and initialize the traversal engines
        for ( final TraversalEngine traversalEngine : allCreatedTraversalEngines )

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