Examples of Prmtop

Examples of name.mjw.jamber.IO.AMBER.Prmtop

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          "/name/mjw/jamber/IO/AMBER/blockedAlanineDipeptide/prmtop").getFile(),"utf-8");
    } catch (UnsupportedEncodingException e1) {
      // TODO Auto-generated catch block
      e1.printStackTrace();
    }
    Prmtop prmtop = new Prmtop();
    try {
      prmtop.read(prmtopName);
    } catch (ParseException | IOException e) {
      e.printStackTrace();
    }

        String inpcrdName = null;
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Examples of name.mjw.jamber.IO.AMBER.Prmtop

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          "/name/mjw/jamber/IO/AMBER/aceticAcid/prmtop").getFile(),"utf-8");
    } catch (UnsupportedEncodingException e1) {
      // TODO Auto-generated catch block
      e1.printStackTrace();
    }
    Prmtop prmtop = new Prmtop();
    try {
      prmtop.read(prmtopName);
    } catch (ParseException | IOException e) {
      // TODO Auto-generated catch block
      e.printStackTrace();
    }
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Examples of name.mjw.jamber.IO.AMBER.Prmtop

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          "/name/mjw/jamber/IO/AMBER/CPDI/prmtop").getFile(), "utf-8");
    } catch (UnsupportedEncodingException e1) {
      // TODO Auto-generated catch block
      e1.printStackTrace();
    }
    Prmtop prmtop = new Prmtop();
    try {
      prmtop.read(prmtopName);
    } catch (ParseException | IOException e) {
      // TODO Auto-generated catch block
      e.printStackTrace();
    }
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Examples of name.mjw.jamber.IO.AMBER.Prmtop

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          .getFile(), "utf-8");
    } catch (UnsupportedEncodingException e1) {
      // TODO Auto-generated catch block
      e1.printStackTrace();
    }
    Prmtop prmtop = new Prmtop();
    try {
      prmtop.read(prmtopName);
    } catch (ParseException | IOException e) {
      // TODO Auto-generated catch block
      e.printStackTrace();
    }
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