Examples of PCM

Examples of ru.autosome.commons.motifModel.mono.PCM

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    super(count);
  }

  @Override
  protected PCM createMotif(double[][] matrix, String name) {
    return new PCM(matrix, name);
  }
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Examples of ru.autosome.commons.motifModel.mono.PCM

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  @Override
  public PWM createMotif(double matrix[][], String name) {
    PWM pwm;
    switch (dataModel) {
      case PCM:
        pwm = new PCM(matrix, name).to_pwm(background);
        break;
      case PPM:
        pwm = new PPM(matrix, name).to_pwm(background, effectiveCount);
        break;
      case PWM:
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