Examples of ParseFasta

bootstrap.ParseFasta
ParseFasta - class for reading a fasta-like formatted file. The assumption is that the file contains a set of multi-line records separated by single-line headers starting with a specific separator (by default ’>’) - Taken from ParseFasta.pm - Mihai Pop @author cmhill

Examples of bootstrap.ParseFasta

      long count_per_file = 0;
      
      File[] listOfFiles = sequenceDir.listFiles();
      
      for (File seqFile : listOfFiles) {
      ParseFasta pf = new ParseFasta(seqFile);
      String[] record = null;
      
      while ((record = pf.getRecord()) != null) {
        //StringBuilder translation = new StringBuilder("");
        
        String sequence = record[1];
        
        // Forward Sequence

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Examples of bootstrap.ParseFasta

      long count_per_file = 0;
      
      File[] listOfFiles = sequenceDir.listFiles();
      
      for (File seqFile : listOfFiles) {
      ParseFasta pf = new ParseFasta(seqFile);
      String[] record = null;
      
      while ((record = pf.getRecord()) != null) {
        //StringBuilder translation = new StringBuilder("");
        
        String sequence = record[1];
        
        // Forward Sequence

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