Examples of PadlockTarget

org.moltools.apps.probemaker.ext.target.PadlockTarget
This Target subclass represents a target for padlock probes for sequence detection. It keeps track of a ligation position found by parsing of a "|"-symbol, or by the setVariant method.
Generates templates for padlock probes.
@author Johan Stenberg @version 1.0

Examples of org.moltools.apps.probemaker.ext.target.PadlockTarget

  public void testTemplatingByTarget() {
    
    TSSConstructor con = new DefaultTSSConstructor();
    DefaultTSSPairDesigner tpd = new DefaultTSSPairDesigner(con);
  
    ProbeMakerTarget target = new PadlockTarget("T1","ATACAGTCGTCCGGGTCGAA|AAGAGCATCGACGCGGATCAAGCCTATCGTCACGCGA","Target 1");
    TSSPair pair = tpd.designTSSPair(target);
    
    Probe p = new DefaultProbe(pair,0,0,NucleotideSequence.DNA);
  
    plc.checkTemplatingByTarget(p);

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