Examples of OWLOntologyDocumentSource

org.semanticweb.owlapi.io.OWLOntologyDocumentSource
A document source provides a point for loading an ontology. A document source may provide three ways of obtaining an ontology document:
1. From a {@link java.io.Reader}
2. From an {@link java.io.InputStream}
3. From an ontology document {@link org.semanticweb.owlapi.model.IRI}
Consumers that use a document source will attempt to obtain a concrete representation of an ontology in the above order.
Note that while an ontology document source may appear similar to a SAX input source, an important difference is that the getReader and getInputStream methods return new instances each time the method is called. This allows multiple attempts at loading an ontology. @author Matthew Horridge, The University Of Manchester, Bio-HealthInformatics Group @since 2.0.0

Examples of org.semanticweb.owlapi.io.OWLOntologyDocumentSource

        assertEquals(v2, secondOntology.getOntologyID().getVersionIRI().get());
    }


    @Test
    public void testSingleVersionLoadChangeIRI() throws Exception {
        OWLOntologyDocumentSource secondDocumentSource = getDocument();
        OWLOntologyID secondUniqueOWLOntologyID = new OWLOntologyID(
                Optional.of(jb), Optional.of(v2));
        OWLOntology secondOntology = manager
                .createOntology(secondUniqueOWLOntologyID);
        OWLParser secondParser = new RDFXMLParser();

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Examples of org.semanticweb.owlapi.io.OWLOntologyDocumentSource

        assertEquals(v2, secondOntology.getOntologyID().getVersionIRI().get());
    }


    @Test
    public void testSingleVersionLoadNoChange() throws Exception {
        OWLOntologyDocumentSource documentSource = getDocument();
        OWLOntologyID initialUniqueOWLOntologyID = new OWLOntologyID(
                Optional.of(jb), Optional.of(v1));
        OWLOntology initialOntology = manager
                .createOntology(initialUniqueOWLOntologyID);
        OWLParser parser = new RDFXMLParser();

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Examples of org.semanticweb.owlapi.io.OWLOntologyDocumentSource

    private static final IRI CREATE0139 = IRI("http://test.example.org/ontology/0139");


    @Test(expected = OWLOntologyAlreadyExistsException.class)
    public void testMultipleVersionLoadChangeIRI() throws Exception {
        // given
        OWLOntologyDocumentSource initialDocumentSource = getDocumentSource();
        OWLOntologyID expected = new OWLOntologyID(Optional.of(CREATE0139),
                Optional.of(CREATEV2));
        OWLOntologyID initialUniqueOWLOntologyID = new OWLOntologyID(
                Optional.of(CREATE0139), Optional.of(CREATEV2));
        OWLOntology initialOntology = m

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Examples of org.semanticweb.owlapi.io.OWLOntologyDocumentSource

    }


    @Test(expected = OWLOntologyAlreadyExistsException.class)
    public void testMultipleVersionLoadNoChange() throws Exception {
        // given
        OWLOntologyDocumentSource documentSource = getDocumentSource();
        OWLOntologyID expected = new OWLOntologyID(Optional.of(CREATE0139),
                Optional.of(CREATEV1));
        OWLOntologyID initialUniqueOWLOntologyID = new OWLOntologyID(
                Optional.of(CREATE0139), Optional.of(CREATEV1));
        OWLOntology initialOntology = m

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Examples of org.semanticweb.owlapi.io.OWLOntologyDocumentSource

    }


    @Test
    public void testMultipleVersionLoadsExplicitOntologyIDs() throws Exception {
        // given
        OWLOntologyDocumentSource documentSource = getDocumentSource();
        OWLOntologyID initialUniqueOWLOntologyID = new OWLOntologyID(
                Optional.of(CREATE0139), Optional.of(CREATEV1));
        OWLOntologyDocumentSource secondDocumentSource = getDocumentSource();
        OWLOntologyID secondUniqueOWLOntologyID = new OWLOntologyID(
                Optional.of(CREATE0139), Optional.of(CREATEV2));
        // when
        OWLOntology initialOntology = m
                .createOntology(initialUniqueOWLOntologyID);

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Examples of org.semanticweb.owlapi.io.OWLOntologyDocumentSource


    @Test
    public void testMultipleVersionLoadsNoOntologyIDFirstTime()
            throws Exception {
        // given
        OWLOntologyDocumentSource documentSource = getDocumentSource();
        OWLOntologyDocumentSource secondDocumentSource = getDocumentSource();
        OWLOntologyID secondUniqueOWLOntologyID = new OWLOntologyID(
                Optional.of(CREATE0139), Optional.of(CREATEV2));
        // when
        OWLOntology initialOntology = m.createOntology();
        parseOnto(documentSource, initialOntology);

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Examples of org.semanticweb.owlapi.io.OWLOntologyDocumentSource


    @Test
    public void testMultipleVersionLoadsNoOntologyVersionIRIFirstTime()
            throws Exception {
        // given
        OWLOntologyDocumentSource documentSource = getDocumentSource();
        OWLOntologyID initialUniqueOWLOntologyID = new OWLOntologyID(
                Optional.of(CREATE0139), Optional.<IRI> absent());
        OWLOntologyDocumentSource secondDocumentSource = getDocumentSource();
        OWLOntologyID secondUniqueOWLOntologyID = new OWLOntologyID(
                Optional.of(CREATE0139), Optional.of(CREATEV2));
        // when
        OWLOntology initialOntology = m
                .createOntology(initialUniqueOWLOntologyID);

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Examples of org.semanticweb.owlapi.io.OWLOntologyDocumentSource

    }


    @Test
    public void testSingleVersionLoadChangeIRI() throws Exception {
        // given
        OWLOntologyDocumentSource secondDocumentSource = getDocumentSource();
        OWLOntologyID secondUniqueOWLOntologyID = new OWLOntologyID(
                Optional.of(CREATE0139), Optional.of(CREATEV2));
        // when
        OWLOntology secondOntology = m
                .createOntology(secondUniqueOWLOntologyID);

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Examples of org.semanticweb.owlapi.io.OWLOntologyDocumentSource

    }


    @Test
    public void testSingleVersionLoadNoChange() throws Exception {
        // given
        OWLOntologyDocumentSource documentSource = getDocumentSource();
        OWLOntologyID initialUniqueOWLOntologyID = new OWLOntologyID(
                Optional.of(CREATE0139), Optional.of(CREATEV1));
        // when
        OWLOntology initialOntology = m
                .createOntology(initialUniqueOWLOntologyID);

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Examples of org.semanticweb.owlapi.io.OWLOntologyDocumentSource


    @Test
    public void shouldParse() throws OWLOntologyCreationException {
        OWLOntologyManager m = OWLManager.createOWLOntologyManager();
        assertEquals(19, m.getOntologyParsers().size());
        @SuppressWarnings("null")
        OWLOntologyDocumentSource source = new StreamDocumentSource(getClass()
                .getResourceAsStream("/celltype.obo"),
                OWLOntologyDocumentSourceBase.getNextDocumentIRI("obo"),
                new OBO12DocumentFormat(), null);
        m.loadOntologyFromOntologyDocument(source);

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