Examples of org.openbel.framework.core.namespace.NamespaceIndexerServiceImpl

Package org.openbel.framework.core.namespace

Examples of org.openbel.framework.core.namespace.NamespaceIndexerServiceImpl

org.openbel.framework.core.namespace.NamespaceIndexerServiceImpl
NamespaceIndexerServiceImpl implements a {@link NamespaceIndexerService}which is responsible for parsing an indexing a BEL namespace document. The procedure is as follows:
- Parse the BEL namespace header into a {@link NamespaceHeader} andmaintain the character stop byte offset in the file.
- Serialize the {@link NamespaceHeader} to a {@link File}.
- Build efficient namespace index by parsing the {@code rawNamespaceFile}starting from the character stop byte offset.
- Create a {@link DataFileIndex} that will encapsulate both the namespaceheader and index files.
@author Anthony Bargnesi {@code }

    public void setup() {
        super.setup();


        final CacheLookupService cacheLookup = new DefaultCacheLookupService();
        final NamespaceIndexerService nsindexer =
                new NamespaceIndexerServiceImpl();
        final CacheableResourceService cacheService =
                new DefaultCacheableResourceService();
        namespaceService = new DefaultNamespaceService(
                cacheService, cacheLookup, nsindexer);
    }

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        final XBELValidatorService validator = createValidator();
        final XBELConverterService converter = createConverter();
        final BELValidatorService belValidator = new BELValidatorServiceImpl();
        final BELConverterService belConverter = new BELConverterServiceImpl();
        final NamespaceIndexerService nsindexer =
                new NamespaceIndexerServiceImpl();
        final CacheLookupService cacheLookup = new DefaultCacheLookupService();
        final NamespaceService nsService = new DefaultNamespaceService(
                cache, cacheLookup, nsindexer);
        final SemanticService semantics = new SemanticServiceImpl(nsService);
        final ExpansionService expansion = new ExpansionServiceImpl();

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        final XBELValidatorService validator = createValidator();
        final XBELConverterService converter = createConverter();
        final BELValidatorService belValidator = new BELValidatorServiceImpl();
        final BELConverterService belConverter = new BELConverterServiceImpl();
        final NamespaceIndexerService nsindexer =
                new NamespaceIndexerServiceImpl();
        final CacheableResourceService cache =
                new DefaultCacheableResourceService();
        final CacheLookupService cacheLookup = new DefaultCacheLookupService();
        final NamespaceService nsService = new DefaultNamespaceService(
                cache, cacheLookup, nsindexer);

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        config = getSystemConfiguration();
        cacheLookupService = new DefaultCacheLookupService();
        cacheService = new DefaultCacheableResourceService();
        final NamespaceIndexerService nsindexer =
                new NamespaceIndexerServiceImpl();
        final NamespaceService namespace = new DefaultNamespaceService(
                cacheService, cacheLookupService, nsindexer);
        cacheMgrService = new DefaultCacheManagerService(
                cacheLookupService, namespace, getReportable());

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                new DefaultCacheableResourceService();
        final CacheLookupService cacheLookup = new DefaultCacheLookupService();
        annoDefService = new DefaultAnnotationDefinitionService(
                cache, cacheLookup);
        final NamespaceIndexerService nsindexer =
                new NamespaceIndexerServiceImpl();
        final NamespaceService nsService = new DefaultNamespaceService(
                cache, cacheLookup, nsindexer);
        final SemanticService semantics = new SemanticServiceImpl(nsService);
        final AnnotationService annotationService =
                new DefaultAnnotationService();

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    @BeforeClass
    public static void createProtoNetwork() {
        final CacheableResourceService crs = new DefaultCacheableResourceService();
        final CacheLookupService cls = new DefaultCacheLookupService();
        final NamespaceService nss = new DefaultNamespaceService( crs, cls,
                new NamespaceIndexerServiceImpl());


        final DefaultPhaseOne p1;
        try {
            p1 = new PhaseOneImpl(
                    new XBELValidatorServiceImpl(),

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        final XBELValidatorService validator = createValidator();
        final XBELConverterService converter = createConverter();
        final BELValidatorService belValidator = new BELValidatorServiceImpl();
        final BELConverterService belConverter = new BELConverterServiceImpl();
        final NamespaceIndexerService nsindexer =
                new NamespaceIndexerServiceImpl();
        final CacheableResourceService cache =
                new DefaultCacheableResourceService();
        final CacheLookupService cacheLookup = new DefaultCacheLookupService();
        final NamespaceService nsService = new DefaultNamespaceService(
                cache, cacheLookup, nsindexer);

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Related Classes of org.openbel.framework.core.namespace.NamespaceIndexerServiceImpl

org.openbel.framework.common.model.DataFileIndex

org.openbel.framework.core.compiler.PhaseOneIntegrationTest

org.openbel.framework.core.df.beldata.namespace.NamespaceHeaderProcessor

org.openbel.framework.core.indexer.Indexer

org.openbel.framework.core.namespace.DefaultNamespaceServiceTest

org.openbel.framework.test.EquivalenceIT

org.openbel.framework.tools.BelCheck

org.openbel.framework.tools.CacheManager

org.openbel.framework.tools.PhaseOneApplication

org.openbel.framework.tools.PhaseThreeApplication

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