Package org.openbel.framework.common.model

Examples of org.openbel.framework.common.model.DataFileIndex

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            Indexer equivalenceIndexer = new Indexer();
            equivalenceIndexer.indexEquivalenceFile(characterStopOffset,
                    rawEquivalenceFile, equivalenceIndexLocation);
        }

        return new DataFileIndex(equivalenceResourceLocation,
                equivalenceIndexLocation, equivalenceHeaderFile);
    }
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            ResolvedResource resolved =
                    cacheService.resolveResource(ResourceType.EQUIVALENCES,
                            equivalence.getResourceLocation());

            final DataFileIndex equivalenceIndex =
                    eqIndexer.indexEquivalence(
                            equivalence.getResourceLocation(),
                            resolved.getCacheResourceCopy());

            final EquivalenceDataIndex dataIndex = new EquivalenceDataIndex(
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        }

        lookupMap = sizedHashMap(set.size());
        for (final EquivalenceDataIndex edi : set) {
            String key = edi.getNamespaceResourceLocation();
            DataFileIndex dfi = edi.getEquivalenceIndex();
            lookupMap.put(key, new JDBMEquivalenceLookup(dfi.getIndexPath()));
        }
    }
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        Indexer namespaceIndexer = new Indexer();
        namespaceIndexer.indexNamespaceFile(characterStopOffset,
                rawNamespaceFile,
                nsIdxLoc);

        return new DataFileIndex(resourceLocation, nsIdxLoc, hdrFile);
    }
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                try {
                    ResolvedResource resolved = cache.resolveResource(
                            ResourceType.EQUIVALENCES,
                            eqLocation);

                    DataFileIndex equivalenceIndex = equivalenceIndexerService
                            .indexEquivalence(eqLocation,
                                    resolved.getCacheResourceCopy());

                    equivalenceDataIndexSet.add(new EquivalenceDataIndex(
                            eqResource.getNamespaceResourceLocation()
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        // Map namespace to lookup
        Map<String, JDBMEquivalenceLookup> lookups =
                sizedHashMap(equivs.size());
        for (final EquivalenceDataIndex edi : equivs) {
            String rl = edi.getNamespaceResourceLocation();
            DataFileIndex dfi = edi.getEquivalenceIndex();
            lookups.put(rl, new JDBMEquivalenceLookup(dfi.getIndexPath()));
        }

        // Open the indices
        for (final JDBMEquivalenceLookup jl : lookups.values()) {
            try {
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        // Map namespace to lookup
        Map<String, JDBMEquivalenceLookup> lookups =
                sizedHashMap(equivs.size());
        for (final EquivalenceDataIndex edi : equivs) {
            String rl = edi.getNamespaceResourceLocation();
            DataFileIndex dfi = edi.getEquivalenceIndex();
            lookups.put(rl, new JDBMEquivalenceLookup(dfi.getIndexPath()));
        }

        // Open the indices
        for (final JDBMEquivalenceLookup jl : lookups.values()) {
            try {
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        // Map namespace to lookup
        Map<String, JDBMEquivalenceLookup> lookups =
                sizedHashMap(equivs.size());
        for (final EquivalenceDataIndex edi : equivs) {
            String rl = edi.getNamespaceResourceLocation();
            DataFileIndex dfi = edi.getEquivalenceIndex();
            lookups.put(rl, new JDBMEquivalenceLookup(dfi.getIndexPath()));
        }

        // Open the indices
        for (final JDBMEquivalenceLookup jl : lookups.values()) {
            try {
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        // Map namespace to lookup
        Map<String, JDBMEquivalenceLookup> lookups =
                sizedHashMap(equivs.size());
        for (final EquivalenceDataIndex edi : equivs) {
            String rl = edi.getNamespaceResourceLocation();
            DataFileIndex dfi = edi.getEquivalenceIndex();
            lookups.put(rl, new JDBMEquivalenceLookup(dfi.getIndexPath()));
        }

        // Open the indices
        for (final JDBMEquivalenceLookup jl : lookups.values()) {
            try {
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        // Map namespace to lookup
        Map<String, JDBMEquivalenceLookup> lookups =
                sizedHashMap(equivs.size());
        for (final EquivalenceDataIndex edi : equivs) {
            String rl = edi.getNamespaceResourceLocation();
            DataFileIndex dfi = edi.getEquivalenceIndex();
            lookups.put(rl, new JDBMEquivalenceLookup(dfi.getIndexPath()));
        }

        // Open the indices
        for (final JDBMEquivalenceLookup jl : lookups.values()) {
            try {
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Related Classes of org.openbel.framework.common.model.DataFileIndex

  • org.openbel.framework.compiler.PhaseThreeImpl
  • org.openbel.framework.compiler.PhaseTwoImpl
  • org.openbel.framework.core.equivalence.DefaultParameterEquivalencer
  • org.openbel.framework.core.equivalence.EquivalenceIndexerServiceImpl
  • org.openbel.framework.core.equivalence.EquivalenceResourceImpl
  • org.openbel.framework.core.namespace.NamespaceIndexerServiceImpl
  • java.io.File
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