Package org.openbel.framework.common.model

Examples of org.openbel.framework.common.model.BELObject

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        if (noItems(args)) {
            // Function arguments cannot be empty
            return false;
        }

        BELObject x = args.get(0);
        if (!(x instanceof Term)) {
            // First argument must be a term
            return false;
        }
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     */
    @Override
    public List<Statement> expand(Term degradation) {
        List<Statement> statements = new ArrayList<Statement>();

        BELObject firstArgument = degradation.getFunctionArguments().get(0);
        Term protein = (Term) firstArgument; // only argument of a protein
                                             // degradation term is the protein

        // Protein degradation term connects to its protein with
        // DIRECTLY_DECREASES relationship
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Related Classes of org.openbel.framework.common.model.BELObject

  • org.openbel.framework.core.compiler.expansion.DegradationExpansionRule
  • org.openbel.framework.core.compiler.expansion.ModificationExpansionRule
  • org.openbel.framework.core.compiler.expansion.MolecularActivityExpansionRule
  • org.openbel.framework.core.compiler.expansion.ReactionExpansionRule
  • org.openbel.framework.core.compiler.expansion.TranslocationExpansionRule
  • org.openbel.framework.core.compiler.SemanticServiceImpl
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