Examples of org.apache.uima.collection.CollectionReaderDescription

org.apache.uima.collection.CollectionReaderDescription
An CollectionReaderDescription contains all of the information needed to instantiate and use an {@link CollectionReader}.

          TypeSystemDescriptionFactory.createTypeSystemDescription();
        
        File textDirectory = new File(batchDir, "text");
        AggregateBuilder aggregate = new AggregateBuilder();
        
        CollectionReaderDescription collectionReader = CollectionReaderFactory.createDescription(
            FilesInDirectoryCollectionReader.class,
            typeSystemDescription,
            "InputDirectory",
            textDirectory.toString()
            );

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      // (found in ctakes-type-system/src/main/resources)
      TypeSystemDescriptionFactory.createTypeSystemDescription();


    AggregateBuilder aggregate = new AggregateBuilder();


    CollectionReaderDescription collectionReader = CollectionReaderFactory.createDescription(
        I2B2Challenge2010CollectionReader.class,
        typeSystemDescription,
        "inputDir",
        parentDirectory
    );

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      TypeSystemDescriptionFactory.createTypeSystemDescription();


    AggregateBuilder aggregate = new AggregateBuilder();


    // input dir is hard-coded in AssertionConst
    CollectionReaderDescription collectionReader = CollectionReaderFactory.createDescription(
        NegExCorpusReader.class,
        typeSystemDescription
    );


    // fill in other values that are necessary for preprocessing

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    splitMipacq.put(new File(inputDirectory+"/text/test"),  testDirectory);
    splitMipacq.put(new File(inputDirectory+"/text/dev"),   devDirectory);
    for (File inDir : splitMipacq.keySet() ) {
      AggregateBuilder aggregate = new AggregateBuilder();


      CollectionReaderDescription collectionReader = CollectionReaderFactory.createDescription(
          FilesInDirectoryCollectionReader.class,
          typeSystemDescription,
          "InputDirectory",
          inDir
          );

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        // use the uimafit method of finding available type system
        // descriptor via META-INF/org.uimafit/types.txt 
        // (found in ctakes-type-system/src/main/resources)
      TypeSystemDescriptionFactory.createTypeSystemDescription();
    
    CollectionReaderDescription collectionReader = CollectionReaderFactory.createDescription(
        FilesInDirectoryCollectionReader.class,
        typeSystemDescription,
        "InputDirectory",
//        "/Users/m081914/work/data/sharp/Seed_Corpus/Mayo/UMLS_CEM/ss1_batch10/Knowtator/text"
        "/Users/m081914/work/sharpattr/ctakes/ctakes-assertion/sharp_data/one/Knowtator/text"

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    if (filename == null) {
      fail("Unable to find file:" + "descriptors/collection_reader/ExtendedTestFileSystemCollectionReader.xml"
              + "in classloader");
    }
    File collectionReaderDescriptor = new File(filename);
    CollectionReaderDescription collectionReaderDescription = UIMAFramework.getXMLParser()
            .parseCollectionReaderDescription(new XMLInputSource(collectionReaderDescriptor));
    CollectionReader collectionReader = UIMAFramework
            .produceCollectionReader(collectionReaderDescription);
    eeUimaEngine.setCollectionReader(collectionReader);
    initialize(eeUimaEngine, appCtx);

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                }                
            } else if (specifier instanceof CasConsumerDescription) {
                CasConsumerDescription ccDescr = (CasConsumerDescription) specifier;
                tsDescription = ccDescr.getCasConsumerMetaData().getTypeSystem();
            } else if (specifier instanceof CollectionReaderDescription) {
                CollectionReaderDescription crDescr = (CollectionReaderDescription) specifier;
                tsDescription = crDescr.getCollectionReaderMetaData().getTypeSystem();
            }
        } catch (ResourceInitializationException e) {
            e.printStackTrace();
        }

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      uimaEEEngine = new BaseUIMAAsynchronousEngine_impl();
    }


    // add Collection Reader if specified
    if (collectionReaderDescriptor != null) {
      CollectionReaderDescription collectionReaderDescription = UIMAFramework.getXMLParser()
              .parseCollectionReaderDescription(new XMLInputSource(collectionReaderDescriptor));


      CollectionReader collectionReader = UIMAFramework
              .produceCollectionReader(collectionReaderDescription);

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                }                
            } else if (specifier instanceof CasConsumerDescription) {
                CasConsumerDescription ccDescr = (CasConsumerDescription) specifier;
                tsDescription = ccDescr.getCasConsumerMetaData().getTypeSystem();
            } else if (specifier instanceof CollectionReaderDescription) {
                CollectionReaderDescription crDescr = (CollectionReaderDescription) specifier;
                tsDescription = crDescr.getCollectionReaderMetaData().getTypeSystem();
            }
        } catch (ResourceInitializationException e) {
            e.printStackTrace();
        }

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            if (list != null && list.size() > 0) {
                aCollectionReaderPath = ((UimaCollectionReader)list.get(0)).getXmlDescriptor();


                resolvedXmlFile = resolveUimaXmlDescriptor(aCollectionReaderPath);


                CollectionReaderDescription crDescr = (CollectionReaderDescription) parseUimaXmlDescriptor (resolvedXmlFile);


                typeSystemList.add(crDescr.getCollectionReaderMetaData().getTypeSystem());
            }            
            
            // Add Cas Processors (AE, Cas Consumer)
            list = getUimaCasProcessors();
            for (int i=0; i<list.size(); ++i) {

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Related Classes of org.apache.uima.collection.CollectionReaderDescription

org.apache.ctakes.assertion.cr.NegExCorpusReader

org.apache.ctakes.assertion.pipelines.GoldEntityAndAttributeReaderPipeline

org.apache.ctakes.assertion.pipelines.GoldEntityAndAttributeReaderPipelineForSeedCorpus

org.apache.ctakes.assertion.pipelines.RunJudgeAttributeInstances

org.apache.ctakes.relationextractor.pipelines.GoldEntityAndRelationReaderPipeline

org.apache.uima.application.metadata.impl.UimaApplication_Impl

org.apache.uima.caseditor.ui.action.ConsumerActionRunnable

org.apache.uima.collection.impl.CollectionReaderDescription_implTest

org.apache.uima.collection.impl.cpm.utils.DescriptorMakeUtil

org.apache.uima.cpe.model.CpeDescriptorModel

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