Package org.apache.airavata.client.api

Examples of org.apache.airavata.client.api.AiravataAPI

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        airavataAPI.getExecutionManager().waitForExperimentTermination(experimentId);
        verifyOutput(experimentId, outputValue);
    }

    protected void verifyOutput(String experimentId, List<String> outputVerifyingString) throws Exception {
        AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(new URI(getRegistryURL()), getGatewayName(), getUserName(),
                new PasswordCallbackImpl());
        log.info("Experiment ID Returned : " + experimentId);

        ExperimentData experimentData = airavataAPI.getProvenanceManager().getExperimentData(experimentId);

        log.info("Verifying output ...");

        List<WorkflowExecutionDataImpl> workflowInstanceData = experimentData.getWorkflowExecutionDataList();
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            }
        }
    }

    private List<WorkflowInput> setupInputs(Workflow workflow, List<String> inputValues) throws Exception {
        AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(new URI(getRegistryURL()), getGatewayName(), getUserName(),
                new PasswordCallbackImpl());
        List<WorkflowInput> workflowInputs = airavataAPI.getWorkflowManager().getWorkflowInputs(workflow.getName());

        Assert.assertEquals(workflowInputs.size(), inputValues.size());

        int i = 0;
        for (String valueString : inputValues) {
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  }

    public void execute(JobExecutionContext jobExecutionContext) throws GFacProviderException {
      GFacUtils.updateApplicationJobStatus(jobExecutionContext, jobId, ApplicationJobStatus.INITIALIZE);
        String shellCmd = createShellCmd(jobExecutionContext);
        AiravataAPI airavataAPI = jobExecutionContext.getGFacConfiguration().getAiravataAPI();
        if (airavataAPI!=null){
          try {
        airavataAPI.getProvenanceManager().updateApplicationJobData(jobId, shellCmd);
      } catch (AiravataAPIInvocationException e) {
        log.error("Error in saving EC2 shell command!!!", e);
      }
        }
        SshClient sshClient = new SshClient();
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  public void updateXBayaConfigurationServiceURLs() {
    try {
      if (this.getConfiguration().getAiravataAPI()!=null && this.getConfiguration().getAiravataAPI()!=null){
                AiravataAPI airavataAPI = getConfiguration().getAiravataAPI();
                AiravataManager airavataManager = airavataAPI.getAiravataManager();
//                AiravataRegistry2 registry=this.getConfiguration().getJcrComponentRegistry().getRegistry();
            URI eventingServiceURL = airavataManager.getEventingServiceURL();
        if (eventingServiceURL!=null) {
          this.getConfiguration().setBrokerURL(eventingServiceURL);
          this.getMonitor()
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    setRegistryURL(createRegistryURL());

        log("Configurations - Registry URL : " + getRegistryURL());

        PasswordCallback passwordCallback = new PasswordCallbackImpl();
        AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(new URI(getRegistryURL()), getGatewayName(), getUserName(),
                passwordCallback);

        checkServerStartup(airavataAPI);

        log("Server successfully started .............................");
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        }
    }

    protected void runWorkFlow(Workflow workflow, List<String> inputValues) throws Exception {

        AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(new URI(getRegistryURL()), getGatewayName(), getUserName(),
                new PasswordCallbackImpl());
        List<WorkflowInput> workflowInputs = setupInputs(workflow, inputValues);
        String workflowName = workflow.getName();
        ExperimentAdvanceOptions options = airavataAPI.getExecutionManager().createExperimentAdvanceOptions(
                workflowName, getUserName(), null);

        options.getCustomSecuritySettings().getCredentialStoreSecuritySettings().setTokenId("1234");

        String experimentId = airavataAPI.getExecutionManager().runExperiment(workflowName, workflowInputs, options);

        Assert.assertNotNull(experimentId);

        log.info("Run workflow completed ....");
        log.info("Starting monitoring ....");
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        monitor(experimentId);
    }

    protected void runWorkFlowWithoutMonitor(Workflow workflow, List<String> inputValues) throws Exception {

        AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(new URI(getRegistryURL()), getGatewayName(), getUserName(),
                new PasswordCallbackImpl());
        List<WorkflowInput> workflowInputs = setupInputs(workflow, inputValues);
        String workflowName = workflow.getName();
        ExperimentAdvanceOptions options = airavataAPI.getExecutionManager().createExperimentAdvanceOptions(
                workflowName, getUserName(), null);
        String experimentId = airavataAPI.getExecutionManager().runExperiment(workflowName, workflowInputs, options,
                new EventDataListenerAdapter() {
                    public void notify(EventDataRepository eventDataRepo, EventData eventData) {
                        // do nothing
                    }
                });

        Assert.assertNotNull(experimentId);
        airavataAPI.getExecutionManager().waitForExperimentTermination(experimentId);

        log.info("Run workflow completed ....");

        verifyOutput(experimentId, "echo_output=Airavata_Test");

        log.info("Verifying application jobs ....");
        List<ApplicationJob> applicationJobs = airavataAPI.getProvenanceManager().getApplicationJobs(experimentId, null, null);
        Assert.assertEquals(applicationJobs.size(), 1);
    }
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        List<ApplicationJob> applicationJobs = airavataAPI.getProvenanceManager().getApplicationJobs(experimentId, null, null);
        Assert.assertEquals(applicationJobs.size(), 1);
    }

    protected void verifyOutput(String experimentId, String outputVerifyingString) throws Exception {
        AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(new URI(getRegistryURL()), getGatewayName(), getUserName(),
                new PasswordCallbackImpl());
        log.info("Experiment ID Returned : " + experimentId);

        ExperimentData experimentData = airavataAPI.getProvenanceManager().getExperimentData(experimentId);

        log.info("Verifying output ...");

        List<WorkflowExecutionDataImpl> workflowInstanceData = experimentData.getWorkflowExecutionDataList();
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            }
        }
    }

    private List<WorkflowInput> setupInputs(Workflow workflow, List<String> inputValues) throws Exception {
        AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(new URI(getRegistryURL()), getGatewayName(), getUserName(),
                new PasswordCallbackImpl());
        List<WorkflowInput> workflowInputs = airavataAPI.getWorkflowManager().getWorkflowInputs(workflow.getName());

        Assert.assertEquals(workflowInputs.size(), inputValues.size());

        int i = 0;
        for (String valueString : inputValues) {
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        log.debug("Workflow compose - " + buffer.toString());
        return buffer.toString();
    }

    public void monitor(final String experimentId) throws Exception {
        AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(new URI(getRegistryURL()), getGatewayName(), getUserName(),
                new PasswordCallbackImpl());
        final Monitor experimentMonitor = airavataAPI.getExecutionManager().getExperimentMonitor(experimentId,
                new EventDataListenerAdapter() {

                    public void notify(EventDataRepository eventDataRepo, EventData eventData) {
                        Assert.assertNotNull(eventDataRepo);
                        Assert.assertNotNull(eventData);
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Related Classes of org.apache.airavata.client.api.AiravataAPI

  • org.apache.airavata.api.samples.ExperimentSample
  • org.apache.airavata.client.AiravataAPIFactory
  • org.apache.airavata.client.AiravataClient
  • org.apache.airavata.client.samples.CreateLaunchExperiment
  • org.apache.airavata.client.samples.CreateLaunchExperimentUS3
  • org.apache.airavata.client.samples.MonitorWorkflow
  • org.apache.airavata.client.samples.TestCreateLaunchExperiment
  • org.apache.airavata.core.gfac.extension.post.OutputRegister
  • org.apache.airavata.core.gfac.scheduler.impl.SchedulerImpl
  • org.apache.airavata.gfac.client.GfacClientFactoryTest
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