Examples of OntologyMetadata

Examples of edu.isi.karma.metadata.OntologyMetadata

112
113
114
115
116
117
118
119
120
121
122
    VWorkspaceRegistry.getInstance().registerVWorkspace(workspace.getId(), vwsp);
   
    logger.info("Start Metadata Setup");
    try {
      metadataManager.register(new SemanticTypeModelMetadata(workspace), updateContainer);
      metadataManager.register(new OntologyMetadata(workspace), updateContainer);
      metadataManager.register(new JSONModelsMetadata(workspace), updateContainer);
      metadataManager.register(new PythonTransformationMetadata(workspace), updateContainer);
      metadataManager.register(new GraphVizMetadata(workspace), updateContainer);
      metadataManager.register(new ModelLearnerMetadata(workspace), updateContainer);
      metadataManager.register(new R2RMLMetadata(workspace), updateContainer);
View Full Code Here

Examples of org.mmisw.orrclient.gwt.client.rpc.OntologyMetadata

41
42
43
44
45
46
47
48
49
  /**
   * @return the ontologyMetadata
   */
  public OntologyMetadata getOntologyMetadata() {
    if ( ontologyMetadata == null ) {
      ontologyMetadata = new OntologyMetadata();
    }
    return ontologyMetadata;
  }
View Full Code Here

Examples of org.mmisw.orrclient.gwt.client.rpc.OntologyMetadata

41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
   
    if ( log.isDebugEnabled() ) {
      log.debug("prepareOntologyMetadata: ontologyUri=" +ontologyInfo.getUri());
    }
   
    OntologyMetadata ontologyMetadata = ontologyInfo.getOntologyMetadata();

    Resource ontRes = JenaUtil2.getFirstIndividual(model, OWL.Ontology);
   
    StringBuilder moreDetails = new StringBuilder();
   
    Map<String, Property> uriPropMap = MdHelper.getUriPropMap();
    Map<String,String> originalValues = new HashMap<String, String>();
   
    if ( ontRes != null ) {
      //
      // Get values from the existing ontology resource
      //
      for ( AttrGroup attrGroup : metadataBaseInfo.getAttrGroups() ) {
        for ( AttrDef attrDef : attrGroup.getAttrDefs() ) {
         
          // get value of MMI property:
          Property mmiProp = uriPropMap.get(attrDef.getUri());
          String prefixedMmi = MdHelper.prefixedName(mmiProp);
          String value = JenaUtil2.getValue(ontRes, mmiProp);
         
          // DC equivalent, which is obtained if necessary
          Property dcProp = null;
         
          if (value == null) {
            // try a DC equivalent to use:
            dcProp = MdHelper.getEquivalentDcProperty(mmiProp);
            if ( dcProp != null ) {
              value = JenaUtil2.getValue(ontRes, dcProp);
            }
          }
         
          if ( value != null ) {
           
            // get value:
            if ( log.isDebugEnabled() ) {
              log.debug("Assigning: " +attrDef.getUri()+ " = " + value);
            }
            originalValues.put(attrDef.getUri(), value);
           
            // Special case: Omv.acronym/OmvMmi.shortNameUri 
            if ( Omv.acronym.getURI().equals(attrDef.getUri()) ) {
              // add also the value of OmvMmi.shortNameUri:
              String shortNameValue = JenaUtil2.getValue(ontRes, OmvMmi.shortNameUri);
              if ( log.isDebugEnabled() ) {
                log.debug("Also assigning " +OmvMmi.shortNameUri.getURI()+ " = " +shortNameValue);
              }
              originalValues.put(OmvMmi.shortNameUri.getURI(), shortNameValue);
            }
           
           

            // add detail:
            if ( dcProp != null ) {
              String prefixedDc = MdHelper.prefixedName(dcProp);
              _addDetail(moreDetails, prefixedMmi, "not present", "Will use " +prefixedDc);
            }
            else {
              _addDetail(moreDetails, prefixedMmi, "present", " ");
            }
          }
          else {
            if ( attrDef.isRequired() && ! attrDef.isInternal() ) {
              if ( dcProp != null ) {
                String prefixedDc = MdHelper.prefixedName(dcProp);
                _addDetail(moreDetails, prefixedMmi, "not present", "and " +prefixedDc+ " not present either");
              } 
              else {
                _addDetail(moreDetails, prefixedMmi, "not present", " not equivalent DC");
              }
            }
          }
        }
      }
    }
    else {
      //
      // No ontology resource. Check required attributes to report in the details:
      //
      for ( AttrGroup attrGroup : metadataBaseInfo.getAttrGroups() ) {
        for ( AttrDef attrDef : attrGroup.getAttrDefs() ) {
          if ( attrDef.isRequired() && ! attrDef.isInternal() ) {
            Property mmiProp = uriPropMap.get(attrDef.getUri());
            String prefixedMmi = MdHelper.prefixedName(mmiProp);
            _addDetail(moreDetails, prefixedMmi, "not present", "required");
          }
        }
      }
    }
   
    // add the new details if any:
    if ( moreDetails.length() > 0 ) {
      String details = ontologyMetadata.getDetails();
      if ( details == null ) {
        ontologyMetadata.setDetails(moreDetails.toString());
      }
      else {
        ontologyMetadata.setDetails(details + "\n" +moreDetails.toString());
      }
    }
   
    ontologyMetadata.setOriginalValues(originalValues);
   
    if ( ontologyInfo.getUri() == null ) {
      // associate the original base URI:
      String uri = model.getNsPrefixURI("");
      if ( uri != null ) {
View Full Code Here

Examples of org.mmisw.orrclient.gwt.client.rpc.OntologyMetadata

138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
   * confirming with the user in case of any possible overwriting of attributes.
   */
  public void tempOntologyInfoObtained(TempOntologyInfo tempOntologyInfo) {

    // get the new values from temp file:
    OntologyMetadata ontologyMetadata = tempOntologyInfo.getOntologyMetadata();
   
   
    // get current values in the editor:
   
    Map<String, String> valuesInEditor = new HashMap<String, String>();
    putValues(valuesInEditor, false);
   
    // and from the file
    Map<String, String> tempValues = ontologyMetadata.getOriginalValues();

    Set<String> commonKeysWithDiffValues = new HashSet<String>();
   
    // see if there're common attributes with different values in both the editor and the new file
    for (String tempKey : tempValues.keySet() ) {
      if ( valuesInEditor.keySet().contains(tempKey) ) {
        String valueInEditor = valuesInEditor.get(tempKey);
        String valueInTemp = tempValues.get(tempKey);
        if ( ((valueInEditor == null) ^ (valueInTemp == null ))
        ||   ! valueInEditor.equals(valueInTemp)
        ) {
          commonKeysWithDiffValues.add(tempKey);
        }
      }
    }

    if ( ! commonKeysWithDiffValues.isEmpty() ) {
     
      // prompt the user for the action to take:
     
      String confirmationMsg =
        "There are different values in the uploaded file for " +commonKeysWithDiffValues.size()+ " of the " +
        "non-empty attributes in the metadata editor. " +
        "Do you want to replace the existing values in the editor with those from the file?\n" +
        "\n" +
        "Select Accept to replace those attributes with values from the file.\n" +
        "\n" +
        "Select Cancel to keep the values in the editor.\n" +
        "\n" +
        "In either case, missing attributes in the editor will be updated with " +
        "available values from the file. \n"
      ;
     
      // add the attribute names for administrators:
      if ( PortalControl.getInstance().getLoginResult() != null ) {
        LoginResult loginResult = PortalControl.getInstance().getLoginResult();
        if ( loginResult.isAdministrator() ) {
          confirmationMsg +=
            "\n" +
            "The attributes are:\n" +
            commonKeysWithDiffValues
            ;
        }
      }
     
      if ( true ) {  // this block is just a quick way to open the enclosing DisclosurePanel, if any
        Widget parent = this.getParent();
        while ( parent != null ) {
          if ( parent instanceof DisclosurePanel ) {
            ((DisclosurePanel) parent).setOpen(true);
            break;
          }
          parent = parent.getParent();
        }
      }

      if ( Window.confirm(confirmationMsg) ) {
        // replace common attributes with values from the file.
        // Keep tempValues map as it is. See below.
      }
      else {
        // keep values in the editor, so remove the corresponding keys from tempValues:
        for ( String tempKey : commonKeysWithDiffValues ) {
          tempValues.remove(tempKey);
        }
      }
     
      // use valuesInEditor map to collect the final set of attributes:
      for ( String tempKey : tempValues.keySet() ) {
        valuesInEditor.put(tempKey, tempValues.get(tempKey));
      }
     
      // and set the final set of attributes:
      ontologyMetadata.setOriginalValues(valuesInEditor);
    }

   
    for ( int i = 0, c = tabPanel.getWidgetCount(); i < c; i++ ) {
      Widget w = tabPanel.getWidget(i);
View Full Code Here

Examples of org.mmisw.orrclient.gwt.client.rpc.OntologyMetadata

263
264
265
266
267
268
269
270
271
    return enabled;
  }

 
  public void resetToOriginalValues(BaseOntologyInfo ontologyInfo, ReviewResult_Old reviewResult_Old, boolean confirm, boolean link) {
    OntologyMetadata ontologyMetadata = ontologyInfo.getOntologyMetadata();
    String ontologyUri = ontologyInfo.getUri();
    resetToOriginalOrNewValues(ontologyUri, ontologyMetadata, true, reviewResult_Old, confirm, link);
  }
View Full Code Here

Examples of org.mmisw.orrclient.gwt.client.rpc.OntologyMetadata

270
271
272
273
274
275
276
277
278
    resetToOriginalOrNewValues(ontologyUri, ontologyMetadata, true, reviewResult_Old, confirm, link);
  }
 

  public void resetToOriginalValues(OntologyInfoPre ontologyInfoPre, ReviewResult_Old reviewResult_Old, boolean confirm, boolean link) {
    OntologyMetadata ontologyMetadata = ontologyInfoPre.getOntologyMetadata();
    String ontologyUri = ontologyInfoPre.getUri();
    resetToOriginalOrNewValues(ontologyUri, ontologyMetadata, true, reviewResult_Old, confirm, link);
  }
View Full Code Here

Examples of org.mmisw.orrclient.gwt.client.rpc.OntologyMetadata

276
277
278
279
280
281
282
283
284
    String ontologyUri = ontologyInfoPre.getUri();
    resetToOriginalOrNewValues(ontologyUri, ontologyMetadata, true, reviewResult_Old, confirm, link);
  }
 
  void resetToNewValues(OntologyInfoPre ontologyInfoPre, ReviewResult_Old reviewResult_Old, boolean confirm, boolean link) {
    OntologyMetadata ontologyMetadata = ontologyInfoPre.getOntologyMetadata();
    String ontologyUri = ontologyInfoPre.getUri();
    resetToOriginalOrNewValues(ontologyUri, ontologyMetadata, false, reviewResult_Old, confirm, link);
  }
View Full Code Here

Examples of org.mmisw.orrclient.gwt.client.rpc.OntologyMetadata

41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
   
    if ( log.isDebugEnabled() ) {
      log.debug("prepareOntologyMetadata: ontologyUri=" +ontologyInfo.getUri());
    }
   
    OntologyMetadata ontologyMetadata = ontologyInfo.getOntologyMetadata();

    Resource ontRes = JenaUtil2.getFirstIndividual(model, OWL.Ontology);
   
    StringBuilder moreDetails = new StringBuilder();
   
    Map<String, Property> uriPropMap = MdHelper.getUriPropMap();
    Map<String,String> originalValues = new HashMap<String, String>();
   
    if ( ontRes != null ) {
      //
      // Get values from the existing ontology resource
      //
      for ( AttrGroup attrGroup : metadataBaseInfo.getAttrGroups() ) {
        for ( AttrDef attrDef : attrGroup.getAttrDefs() ) {
         
          // get value of MMI property:
          Property mmiProp = uriPropMap.get(attrDef.getUri());
          String prefixedMmi = MdHelper.prefixedName(mmiProp);
          String value = JenaUtil2.getValue(ontRes, mmiProp);
         
          // DC equivalent, which is obtained if necessary
          Property dcProp = null;
         
          if (value == null) {
            // try a DC equivalent to use:
            dcProp = MdHelper.getEquivalentDcProperty(mmiProp);
            if ( dcProp != null ) {
              value = JenaUtil2.getValue(ontRes, dcProp);
            }
          }
         
          if ( value != null ) {
           
            // get value:
            if ( log.isDebugEnabled() ) {
              log.debug("Assigning: " +attrDef.getUri()+ " = " + value);
            }
            originalValues.put(attrDef.getUri(), value);
           
            // Special case: Omv.acronym/OmvMmi.shortNameUri 
            if ( Omv.acronym.getURI().equals(attrDef.getUri()) ) {
              // add also the value of OmvMmi.shortNameUri:
              String shortNameValue = JenaUtil2.getValue(ontRes, OmvMmi.shortNameUri);
              if ( log.isDebugEnabled() ) {
                log.debug("Also assigning " +OmvMmi.shortNameUri.getURI()+ " = " +shortNameValue);
              }
              originalValues.put(OmvMmi.shortNameUri.getURI(), shortNameValue);
            }
           
           

            // add detail:
            if ( dcProp != null ) {
              String prefixedDc = MdHelper.prefixedName(dcProp);
              _addDetail(moreDetails, prefixedMmi, "not present", "Will use " +prefixedDc);
            }
            else {
              _addDetail(moreDetails, prefixedMmi, "present", " ");
            }
          }
          else {
            if ( attrDef.isRequired() && ! attrDef.isInternal() ) {
              if ( dcProp != null ) {
                String prefixedDc = MdHelper.prefixedName(dcProp);
                _addDetail(moreDetails, prefixedMmi, "not present", "and " +prefixedDc+ " not present either");
              } 
              else {
                _addDetail(moreDetails, prefixedMmi, "not present", " not equivalent DC");
              }
            }
          }
        }
      }
    }
    else {
      //
      // No ontology resource. Check required attributes to report in the details:
      //
      for ( AttrGroup attrGroup : metadataBaseInfo.getAttrGroups() ) {
        for ( AttrDef attrDef : attrGroup.getAttrDefs() ) {
          if ( attrDef.isRequired() && ! attrDef.isInternal() ) {
            Property mmiProp = uriPropMap.get(attrDef.getUri());
            String prefixedMmi = MdHelper.prefixedName(mmiProp);
            _addDetail(moreDetails, prefixedMmi, "not present", "required");
          }
        }
      }
    }
   
    // add the new details if any:
    if ( moreDetails.length() > 0 ) {
      String details = ontologyMetadata.getDetails();
      if ( details == null ) {
        ontologyMetadata.setDetails(moreDetails.toString());
      }
      else {
        ontologyMetadata.setDetails(details + "\n" +moreDetails.toString());
      }
    }
   
    ontologyMetadata.setOriginalValues(originalValues);
   
    // associate the original base URI:
    String uri = model.getNsPrefixURI("");
    if ( uri != null ) {
      String base_ = JenaUtil2.removeTrailingFragment(uri);
View Full Code Here
TOP
Copyright © 2018 www.massapi.com. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.