Examples of MsAmandaScore

Examples of com.compomics.util.experiment.refinementparameters.MsAmandaScore

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                                            if (!eValues.containsKey(se) || eValues.get(se) > eValue) {
                                                eValues.put(se, eValue);
                                                if (se == Advocate.mascot.getIndex()) {
                                                    mascotScore = ((MascotScore) assumption.getUrParam(new MascotScore(0))).getScore();
                                                } else if (se == Advocate.msAmanda.getIndex()
                                                        && peptideAssumption.getUrParam(new MsAmandaScore()) != null) {
                                                    msAmandaScore = ((MsAmandaScore) assumption.getUrParam(new MsAmandaScore())).getScore();
                                                }
                                            }
                                        }
                                    }
                                }
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Examples of com.compomics.util.experiment.refinementparameters.MsAmandaScore

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                                    // save the special advocate scores
                                    if (tempAdvocate == Advocate.mascot.getIndex()) {
                                        mascotScore = ((MascotScore) peptideAssumption.getUrParam(new MascotScore(0))).getScore();
                                    } else if (tempAdvocate == Advocate.msAmanda.getIndex()
                                            && peptideAssumption.getUrParam(new MsAmandaScore()) != null) {
                                        msAmandaScore = ((MsAmandaScore) peptideAssumption.getUrParam(new MsAmandaScore())).getScore();
                                    }
                                }
                            }
                        }
                    }
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