Examples of MisoPerlDaemonQuery

uk.ac.bbsrc.tgac.miso.core.service.integration.contract.impl.MisoPerlDaemonQuery
A class that can build queries that can be consumed by the MISO Interrogation Daemon @author Rob Davey @date 07-Oct-2010 @since 0.0.2

Examples of uk.ac.bbsrc.tgac.miso.core.service.integration.contract.impl.MisoPerlDaemonQuery

    return sts;
  }


  @Override
  public List<String> listRunsByHealthType(SequencerReference sr, HealthType healthType) throws InterrogationException {
    String response = doQuery(sr, new MisoPerlDaemonInterrogationMechanism(), new MisoPerlDaemonQuery("Illumina", healthType.getKey().toLowerCase())).parseResult();
    List<String> s = new ArrayList<String>();
    if (response != null) {
      String[] ss = response.split(",");
      for (String sss : ss) {
        String regex = ".*/([\\d]+_[A-z0-9]+_[\\d]+_[A-z0-9_]*)/.*";

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Examples of uk.ac.bbsrc.tgac.miso.core.service.integration.contract.impl.MisoPerlDaemonQuery

    return s;
  }


  @Override
  public Status getRunStatus(SequencerReference sr, String runName) throws InterrogationException {
    MisoPerlDaemonQuery runStatusQuery = new MisoPerlDaemonQuery("Illumina", runName, "status");


    try {
      JSONObject response = JSONObject.fromObject(doQuery(sr, new MisoPerlDaemonInterrogationMechanism(), runStatusQuery).parseResult());
      if (response != null && response.has("response")) {
        JSONArray a = response.getJSONArray("response");

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Examples of uk.ac.bbsrc.tgac.miso.core.service.integration.contract.impl.MisoPerlDaemonQuery

    return null;
  }


  @Override
  public JSONObject getRunInformation(SequencerReference sr, String runName) throws InterrogationException {
    MisoPerlDaemonQuery runInfoQuery = new MisoPerlDaemonQuery("Illumina", runName, "status");


    JSONObject json = new JSONObject();
    try {
      JSONObject response = JSONObject.fromObject(doQuery(sr, new MisoPerlDaemonInterrogationMechanism(), runInfoQuery).parseResult());
      if (response != null && response.has("response")) {

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Examples of uk.ac.bbsrc.tgac.miso.core.service.integration.contract.impl.MisoPerlDaemonQuery

    return null;
  }


  @Override
  public List<String> listRunsByHealthType(SequencerReference sr, HealthType healthType) throws InterrogationException {
    String response = doQuery(sr, new MisoPerlDaemonInterrogationMechanism(), new MisoPerlDaemonQuery("454", healthType.getKey().toLowerCase())).parseResult();
    List<String> s = new ArrayList<String>();
    if (response != null) {
      String[] ss = response.split(",");
      for (String sss : ss) {
        String regex = ".*/([\\d]+_[A-z0-9]+_[\\d]+_[A-z0-9_]*)/.*";

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Examples of uk.ac.bbsrc.tgac.miso.core.service.integration.contract.impl.MisoPerlDaemonQuery

    Collections.sort(s);
    return s;
  }


  public Status getRunStatus(SequencerReference sr, String runName) throws InterrogationException {
    MisoPerlDaemonQuery runStatusQuery = new MisoPerlDaemonQuery("454", runName, "status");


    try {
      JSONObject response = JSONObject.fromObject(doQuery(sr, new MisoPerlDaemonInterrogationMechanism(), runStatusQuery).parseResult());
      if (response != null && response.has("response")) {
        JSONArray a = response.getJSONArray("response");

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Examples of uk.ac.bbsrc.tgac.miso.core.service.integration.contract.impl.MisoPerlDaemonQuery

    }
    return null;
  }


  public JSONObject getRunInformation(SequencerReference sr, String runName) throws InterrogationException {
    MisoPerlDaemonQuery runInfoQuery = new MisoPerlDaemonQuery("454", runName, "status");


    JSONObject json = new JSONObject();
    try {
      JSONObject response = JSONObject.fromObject(doQuery(sr, new MisoPerlDaemonInterrogationMechanism(), runInfoQuery).parseResult());
      if (response != null && response.has("response")) {

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