Examples of Log

Examples of htsjdk.samtools.util.Log

74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
     * Main method for the program.  Checks that all input files are present and
     * readable and that the output file can be written to.  Then iterates through
     * all the records accumulating metrics.  Finally writes metrics file
     */
    protected int doWork() {
        final Log log = Log.getInstance(getClass());
        final ProgressLogger progress = new ProgressLogger(log);

        // Some quick parameter checking
        IOUtil.assertFileIsReadable(INPUT);
        IOUtil.assertFileIsWritable(OUTPUT);

        log.info("Reading input file and calculating metrics.");

        final SAMFileReader sam = new SAMFileReader(IOUtil.openFileForReading(INPUT));

        final MetricsFile<QualityYieldMetrics,Integer> metricsFile = getMetricsFile();
        final QualityYieldMetrics metrics = new QualityYieldMetrics();
View Full Code Here

Examples of jmathexpr.arithmetic.func.Log

125
126
127
128
129
130
131
132
133
134
        assertEquals(evaluated, Naturals.one());
       
        x.setValue(R.create(1));
        System.out.printf("  %s%n", exp.evaluate());
       
        Function log = new Log(N.create(10), N.create(1000));
        evaluated = log.evaluate();
        System.out.printf("%s = %s%n", log, evaluated);
        assertEquals(evaluated, N.create(3));
    }
View Full Code Here

Examples of jmt.engine.dataAnalysis.Log

135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
  /**
   * Used only for test.
   */
  public static boolean test(String fileName) {
    Log writer = new Log(fileName);
    Exponential e = new Exponential();
    ExponentialPar p = null;
    try {
      p = new ExponentialPar(1.0);
    } catch (IncorrectDistributionParameterException e1) {
      e1.printStackTrace();
    }
    for (int i = 0; i < 5; i++) {
      try {
        writer.write(e.nextRand(p));
      } catch (IncorrectDistributionParameterException e1) {
        e1.printStackTrace();
      }
    }
    writer.close();
    ReplayerPar reader = new ReplayerPar(fileName);
    for (int i = 0; i < 15; i++) {
      System.out.println(reader.getNext());
    }
    return false;
View Full Code Here

Examples of net.ex337.scriptus.model.api.functions.Log

253
254
255
256
257
258
259
260
   
  }
 
  public void log(Object o) {
        ContinuationPending pending = Context.getCurrentContext().captureContinuation();
        pending.setApplicationState(new Log(o));
        throw pending;
  }
View Full Code Here

Examples of net.sf.launch4j.Log

326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
    public void actionPerformed(ActionEvent e) {
      try {
        getGlassPane().setVisible(true);
        Worker.post(new Task() {
          public Object run() throws ExecException {
            Log log = Log.getSwingLog(_configForm.getLogTextArea());
            log.clear();
            String path = _outfile.getPath();
            if (Util.WINDOWS_OS) {
              log.append(Messages.getString("MainFrame.executing") + path);
              Util.exec(new String[] { path }, log);
            } else {
              log.append(Messages.getString("MainFrame.jar.integrity.test")
                  + path);
              Util.exec(new String[] { "java", "-jar", path }, log);
            }
            return null;
          }
View Full Code Here

Examples of net.sourceforge.pebble.logging.Log

60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
   * @param response the HttpServletResponse instance
   * @return the name of the next view
   */
  public View process(HttpServletRequest request, HttpServletResponse response) throws ServletException {
    Blog blog = (Blog)getModel().get(Constants.BLOG_KEY);
    Log log = getLog(request, response);

    Set<String> countries = new TreeSet<String>(new Comparator<String>() {
      public int compare(String s1, String s2) {
        return s1 != null ? s1.compareToIgnoreCase(s2) : -1;
      }
    });
    Map<String,Integer> consolidatedCountries = new HashMap<String,Integer>();
    Map<String,Integer> countriesForNewsFeeds = new HashMap<String,Integer>();
    Map<String,Integer> countriesForPageViews = new HashMap<String,Integer>();
    Map<String,Integer> countriesForFileDownloads = new HashMap<String,Integer>();

    LookupService lookupService = null;

    try {
      String filename = getClass().getResource("/geo-ip.dat").toExternalForm().substring(5);
      lookupService = new LookupService(filename, LookupService.GEOIP_MEMORY_CACHE);

      for (LogEntry logEntry : log.getLogEntries()) {
        String country = lookupService.getCountry(logEntry.getHost()).getName();
        countries.add(country);
        register(country, countriesForNewsFeeds);
        register(country, countriesForPageViews);
        register(country, countriesForFileDownloads);
View Full Code Here

Examples of net.yacy.kelondro.logging.Log

58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
        final serverObjects prop = new serverObjects();
        if ((post == null) || (env == null) || !yacyNetwork.authentifyRequest(post, env)) {
            return prop;
        }
       
        final Log log = sb.getLog();

        //int proxyPrefetchDepth = Integer.parseInt(env.getConfig("proxyPrefetchDepth", "0"));
        //int crawlingDepth = Integer.parseInt(env.getConfig("crawlingDepth", "0"));

        // request values
        final String iam        = post.get("iam", "");      // seed hash of requester
        final String youare     = post.get("youare", "");    // seed hash of the target peer, needed for network stability
        //String process    = post.get("process", "");  // process type
        final String key        = post.get("key", "");      // transmission key
        //String receivedUrlhash    = post.get("urlhash", "");  // the url hash that has been crawled
        final String result     = post.get("result", "");   // the result; either "ok" or "fail"
        final String reason     = post.get("reason", "");   // the reason for that result
        //String words      = post.get("wordh", "");    // priority word hashes
        final String propStr    = crypt.simpleDecode(post.get("lurlEntry", ""), key);
       
        /*
         the result can have one of the following values:
         negative cases, no retry
           unavailable - the resource is not available (a broken link); not found or interrupted
           exception   - an exception occurred
           robot       - a robot-file has denied to crawl that resource

         negative cases, retry possible
           rejected    - the peer has rejected to load the resource
           dequeue     - peer too busy - rejected to crawl
        
         positive cases with crawling
           fill        - the resource was loaded and processed
           update      - the resource was already in database but re-loaded and processed
  
         positive cases without crawling  
           known       - the resource is already in database, believed to be fresh and not reloaded
           stale       - the resource was reloaded but not processed because source had no changes

        */
       
        final yacySeed otherPeer = sb.peers.get(iam);
        final String otherPeerName = iam + ":" + ((otherPeer == null) ? "NULL" : (otherPeer.getName() + "/" + otherPeer.getVersion()));       

        if ((sb.peers.mySeed() == null) || (!(sb.peers.mySeed().hash.equals(youare)))) {
            // no yacy connection / unknown peers
            prop.put("delay", "3600");
            return prop;
        }
       
        if (propStr == null) {
            // error with url / wrong key
            prop.put("delay", "3600");
            return prop;
        }
       
        if ((sb.isRobinsonMode()) && (!sb.isInMyCluster(otherPeer))) {
          // we reject urls that are from outside our cluster
          prop.put("delay", "9999");
          return prop;
      }
       
        // generating a new loaded URL entry
        final URIMetadataRow entry = URIMetadataRow.importEntry(propStr);
        if (entry == null) {
            if (log.isWarning()) log.logWarning("crawlReceipt: RECEIVED wrong RECEIPT (entry null) from peer " + iam + "\n\tURL properties: "+ propStr);
            prop.put("delay", "3600");
            return prop;
        }
       
        final URIMetadataRow.Components metadata = entry.metadata();
        if (metadata.url() == null) {
            if (log.isWarning()) log.logWarning("crawlReceipt: RECEIVED wrong RECEIPT (url null) for hash " + ASCII.String(entry.hash()) + " from peer " + iam + "\n\tURL properties: "+ propStr);
            prop.put("delay", "3600");
            return prop;
        }
       
        // check if the entry is in our network domain
        final String urlRejectReason = sb.crawlStacker.urlInAcceptedDomain(metadata.url());
        if (urlRejectReason != null) {
            if (log.isWarning()) log.logWarning("crawlReceipt: RECEIVED wrong RECEIPT (" + urlRejectReason + ") for hash " + ASCII.String(entry.hash()) + " from peer " + iam + "\n\tURL properties: "+ propStr);
            prop.put("delay", "9999");
            return prop;
        }
       
        if ("fill".equals(result)) try {
            // put new entry into database
            sb.indexSegments.urlMetadata(Segments.Process.RECEIPTS).store(entry);
            ResultURLs.stack(entry, youare.getBytes(), iam.getBytes(), EventOrigin.REMOTE_RECEIPTS);
            sb.crawlQueues.delegatedURL.remove(entry.hash()); // the delegated work has been done
            if (log.isInfo()) log.logInfo("crawlReceipt: RECEIVED RECEIPT from " + otherPeerName + " for URL " + ASCII.String(entry.hash()) + ":" + metadata.url().toNormalform(false, true));

            // ready for more
            prop.put("delay", "10");
            return prop;
        } catch (final IOException e) {
View Full Code Here

Examples of nu.fw.jeti.util.Log

195
196
197
198
199
200
201
202
203
204
205
      }
    }
    //parse plugins? make better or make comments
    new StatusIcons(parser);
    Jeti jeti = new Jeti(backend,container);
    new Log(backend);
    new Popups(backend.getMainWindow());
    pluginsInfo = new PluginsInfo(backend,parser,this);
    jeti.init();
    if(container!=null) container.add(jeti);
    else backend.getMainWindow().setVisible(true);
View Full Code Here

Examples of org.apache.ace.log.Log

45
46
47
48
49
50
51
52
53
     */
    public Object addingService(ServiceReference ref) {
        // get the service based upon the reference, and return it
        // make sure the real Log will be used, and all events in the
        // cache are being flushed to the real Log.
        Log externalLog = (Log) m_context.getService(ref);
        m_proxy.setLog(externalLog);
        return externalLog;
    }
View Full Code Here

Examples of org.apache.commons.logging.Log

35
36
37
38
39
40
41
42
43
44
45
   
    public final static String HEADER_LOG_ID = "org.apache.synapse.transport.nhttp.headers";
    public final static String WIRE_LOG_ID = "org.apache.synapse.transport.nhttp.wire";

    public static NHttpClientHandler decorate(NHttpClientHandler handler) {
        Log log = LogFactory.getLog(handler.getClass());
        if (log.isDebugEnabled()) {
            handler = new LoggingNHttpClientHandler(log, handler);
        }
        return handler;
    }
View Full Code Here
TOP
Copyright © 2018 www.massapi.com. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.