Examples of Kronometre

Examples of gem.util.Kronometre

326
327
328
329
330
331
332
333
334
335
336
    return rftSet.size();
  }

  public static void main(String[] args) throws Throwable
  {
    Kronometre kron = new Kronometre();
    GEM m = new GEM();
    m.run();
    kron.stop();
    kron.print();
  }
View Full Code Here

Examples of gem.util.Kronometre

17
18
19
20
21
22
23
24
25
26
27
28
29
30
{
  private static Map<String, Set<String>> tar2fac;

  public static void main(String[] args) throws Throwable
  {
    Kronometre k = new Kronometre();

//    writeTripsRecursive("result/temp/");
    createSeriesForTargetAndFactor();
//    writeTargetMachineryInGraphML("result/Result_fdr0.05_var1.0.xls");

    k.stop();
    k.print();
  }
View Full Code Here

Examples of gem.util.Kronometre

48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
  //public static Font upFont;
  //public static Font downFont;

  public static void main(String[] args) throws Throwable
  {
    Kronometre kron = new Kronometre();
    String file = "result/Result_fdr0.05_var1.0_AR_expo_prostate";

    comtype = "33";
    String plat = "GPL8300";
    List<Triplet> trips = Triplet.readTripsAndAssociate(file + ".xls",
      "resource/expop/expop_1.txt", "resource/expop/expop_2.txt", "resource/expop/expop_3.txt");
//    List<Triplet> trips = Triplet.readTrips(file + ".xls");
    Iterator<Triplet> iter = trips.iterator();
    while (iter.hasNext())
    {
      Triplet t =  iter.next();
      if (t.fac_id.startsWith("M")) iter.remove();
    }
    System.out.println("trips.size() = " + trips.size());
//    CrossPlatformMapper.associateAndClean(trips, "resource/expop/nikidata.txt");
//    CrossPlatformMapper.associateWithGSE6919(trips, plat);

//    trips = Triplet.selectModulator(trips, "SPDEF");

    posCancer = CellTypeMatcher.getCancerProstateInExpop(comtype);
//    posNormal = CellTypeMatcher.getCancerProstateInExpop(comtype + "_primary");
    posNormal = CellTypeMatcher.getBenignProstateInExpop(comtype);
//    posCancer = CrossPlatformMapper.getPosInGSE6919(plat, false);
//    posNormal = CrossPlatformMapper.getPosInGSE6919(plat, true);

//    CellTypeMatcher.randomizeInside(posCancer, posNormal);

    boolean[] pos = CellTypeMatcher.takeOR(posNormal, posCancer);
    CellTypeMatcher.replaceValsToRanks(trips, pos);

    fillChangeMaps(trips);
    keepMostChangedTargetIsoforms(trips);
    fillMappingsAfter(trips);

    generateSVG(trips, file + "_in" + comtype);
//    generatePNG(trips, file);
//    printScores(trips);
    kron.stop();
    kron.print();
  }
View Full Code Here

Examples of gem.util.Kronometre

185
186
187
188
189
190
191
192
193
194
195
    return 1;
  }

  public static void main(String[] args) throws Throwable
  {
    Kronometre kron = new Kronometre();
    GEMAllPairs m = new GEMAllPairs();
    m.run();
    kron.stop();
    kron.print();
  }
View Full Code Here

Examples of gem.util.Kronometre

32
33
34
35
36
37
38
39
40
41
42
  public Progress(int totalTicks, int length)
  {
    this.length = length;
    this.totalTicks = totalTicks;
    this.total = totalTicks;
    this.kron = new Kronometre();
    kron.start();

    System.out.print("\n|");
    for (int i = 0; i < length; i++) System.out.print(" ");
    System.out.print("|\n ");
View Full Code Here
TOP
Copyright © 2018 www.massapi.com. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.