Examples of JSparklinesIntervalChartTableCellRenderer

no.uib.jsparklines.renderers.JSparklinesIntervalChartTableCellRenderer

Examples of no.uib.jsparklines.renderers.JSparklinesIntervalChartTableCellRenderer


        spectrumTable.getColumn("ID").setCellRenderer(new JSparklinesIntegerColorTableCellRenderer(java.awt.Color.lightGray, idSoftwareSpectrumLevelColorMap, idSoftwareSpectrumLevelTooltipMap));
        spectrumTable.getColumn("m/z").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100d, peptideShakerGUI.getSparklineColor()));
        spectrumTable.getColumn("Charge").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 4d, peptideShakerGUI.getSparklineColor()));
        spectrumTable.getColumn("Int").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 1000d, peptideShakerGUI.getSparklineColor()));
        spectrumTable.getColumn("RT").setCellRenderer(new JSparklinesIntervalChartTableCellRenderer(PlotOrientation.HORIZONTAL, 0d,
                1000d, 10d, peptideShakerGUI.getSparklineColor(), peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) spectrumTable.getColumn("m/z").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
        ((JSparklinesBarChartTableCellRenderer) spectrumTable.getColumn("Charge").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() - 30);
        ((JSparklinesBarChartTableCellRenderer) spectrumTable.getColumn("Int").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
        ((JSparklinesIntervalChartTableCellRenderer) spectrumTable.getColumn("RT").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() + 5);

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Examples of no.uib.jsparklines.renderers.JSparklinesIntervalChartTableCellRenderer


                    spectrumTable.getColumn("Charge").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL,
                            (double) ((PSMaps) identification.getUrParam(new PSMaps())).getPsmSpecificMap().getMaxCharge(), peptideShakerGUI.getSparklineColor()));
                    spectrumTable.getColumn("Int").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL,
                            SpectrumFactory.getInstance().getMaxIntensity(), peptideShakerGUI.getSparklineColor()));
                    spectrumTable.getColumn("RT").setCellRenderer(new JSparklinesIntervalChartTableCellRenderer(PlotOrientation.HORIZONTAL, SpectrumFactory.getInstance().getMinRT(),
                            SpectrumFactory.getInstance().getMaxRT(), SpectrumFactory.getInstance().getMaxRT() / 50, peptideShakerGUI.getSparklineColor(), peptideShakerGUI.getSparklineColor()));
                    ((JSparklinesBarChartTableCellRenderer) spectrumTable.getColumn("Charge").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() - 30);
                    ((JSparklinesBarChartTableCellRenderer) spectrumTable.getColumn("Int").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() + 20);
                    ((JSparklinesBarChartTableCellRenderer) spectrumTable.getColumn("Int").getCellRenderer()).setLogScale(true);
                    ((JSparklinesIntervalChartTableCellRenderer) spectrumTable.getColumn("RT").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() + 5);

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Examples of no.uib.jsparklines.renderers.JSparklinesIntervalChartTableCellRenderer

        peptideInferenceTooltipMap.put(PSParameter.RELATED, "Belongs to a group of related proteins");
        peptideInferenceTooltipMap.put(PSParameter.RELATED_AND_UNRELATED, "Belongs to a group of related and unrelated proteins");
        peptideInferenceTooltipMap.put(PSParameter.UNRELATED, "Belongs to unrelated proteins");


        peptideTable.getColumn("PI").setCellRenderer(new JSparklinesIntegerColorTableCellRenderer(peptideShakerGUI.getSparklineColor(), peptideInferenceColorMap, peptideInferenceTooltipMap));
        peptideTable.getColumn("Start").setCellRenderer(new JSparklinesIntervalChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100d, 100d, peptideShakerGUI.getSparklineColor()));
        peptideTable.getColumn("PDB").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/pdb.png")),
                null,
                "Mapped to PDB Structure", null));
        peptideTable.getColumn("").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));

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Examples of no.uib.jsparklines.renderers.JSparklinesIntervalChartTableCellRenderer

        ((JSparklinesBarChartTableCellRenderer) pdbMatchesJTable.getColumn("Chains").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());


        pdbChainsJTable.getColumn("Coverage").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) pdbChainsJTable.getColumn("Coverage").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());


        pdbChainsJTable.getColumn("PDB-Protein").setCellRenderer(new JSparklinesIntervalChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, 10.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesIntervalChartTableCellRenderer) pdbChainsJTable.getColumn("PDB-Protein").getCellRenderer()).showReferenceLine(true, 0.02, Color.BLACK);
    }

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Examples of no.uib.jsparklines.renderers.JSparklinesIntervalChartTableCellRenderer

                ((TitledBorder) peptidesPanel.getBorder()).setTitle(title);


                peptidesPanel.repaint();


                String tempSequence = sequenceFactory.getProtein(proteinMatch.getMainMatch()).getSequence();
                peptideTable.getColumn("Start").setCellRenderer(new JSparklinesIntervalChartTableCellRenderer(
                        PlotOrientation.HORIZONTAL, (double) tempSequence.length(),
                        ((double) tempSequence.length()) / 50, peptideShakerGUI.getSparklineColor()));
                ((JSparklinesIntervalChartTableCellRenderer) peptideTable.getColumn("Start").getCellRenderer()).showReferenceLine(true, 0.02, Color.BLACK);
                ((JSparklinesIntervalChartTableCellRenderer) peptideTable.getColumn("Start").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() - 10);

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Examples of no.uib.jsparklines.renderers.JSparklinesIntervalChartTableCellRenderer

        relatedPeptidesTable.getColumn("  ").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));


        selectedPsmsTable.getColumn("Charge").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 10.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) selectedPsmsTable.getColumn("Charge").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() - 30);
        selectedPsmsTable.getColumn("  ").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));
        selectedPsmsTable.getColumn("RT").setCellRenderer(new JSparklinesIntervalChartTableCellRenderer(PlotOrientation.HORIZONTAL, 0d,
                1000d, 10d, peptideShakerGUI.getSparklineColor(), peptideShakerGUI.getSparklineColor()));
        ((JSparklinesIntervalChartTableCellRenderer) selectedPsmsTable.getColumn("RT").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() + 5);
        ((JSparklinesIntervalChartTableCellRenderer) selectedPsmsTable.getColumn("RT").getCellRenderer()).showReferenceLine(true, 0.02, java.awt.Color.BLACK);
        selectedPsmsTable.getColumn("   ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));


        relatedPsmsTable.getColumn("Charge").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 10.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) relatedPsmsTable.getColumn("Charge").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() - 30);
        relatedPsmsTable.getColumn("  ").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));
        relatedPsmsTable.getColumn("RT").setCellRenderer(new JSparklinesIntervalChartTableCellRenderer(PlotOrientation.HORIZONTAL, 0d,
                1000d, 10d, peptideShakerGUI.getSparklineColor(), peptideShakerGUI.getSparklineColor()));
        ((JSparklinesIntervalChartTableCellRenderer) relatedPsmsTable.getColumn("RT").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() + 5);
        ((JSparklinesIntervalChartTableCellRenderer) relatedPsmsTable.getColumn("RT").getCellRenderer()).showReferenceLine(true, 0.02, java.awt.Color.BLACK);
        relatedPsmsTable.getColumn("   ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),

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Examples of no.uib.jsparklines.renderers.JSparklinesIntervalChartTableCellRenderer

            public void run() {


                try {


                    // now we have date so we can update the RT cell renderers max and min values
                    selectedPsmsTable.getColumn("RT").setCellRenderer(new JSparklinesIntervalChartTableCellRenderer(PlotOrientation.HORIZONTAL, SpectrumFactory.getInstance().getMinRT(),
                            SpectrumFactory.getInstance().getMaxRT(), SpectrumFactory.getInstance().getMaxRT() / 50, peptideShakerGUI.getSparklineColor(), peptideShakerGUI.getSparklineColor()));
                    ((JSparklinesIntervalChartTableCellRenderer) selectedPsmsTable.getColumn("RT").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() + 5);
                    ((JSparklinesIntervalChartTableCellRenderer) selectedPsmsTable.getColumn("RT").getCellRenderer()).showReferenceLine(true, 0.02, java.awt.Color.BLACK);
                    relatedPsmsTable.getColumn("RT").setCellRenderer(new JSparklinesIntervalChartTableCellRenderer(PlotOrientation.HORIZONTAL, SpectrumFactory.getInstance().getMinRT(),
                            SpectrumFactory.getInstance().getMaxRT(), SpectrumFactory.getInstance().getMaxRT() / 50, peptideShakerGUI.getSparklineColor(), peptideShakerGUI.getSparklineColor()));
                    ((JSparklinesIntervalChartTableCellRenderer) relatedPsmsTable.getColumn("RT").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() + 5);
                    ((JSparklinesIntervalChartTableCellRenderer) relatedPsmsTable.getColumn("RT").getCellRenderer()).showReferenceLine(true, 0.02, java.awt.Color.BLACK);


                    identification = peptideShakerGUI.getIdentification();

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Examples of no.uib.jsparklines.renderers.JSparklinesIntervalChartTableCellRenderer

                    }
                }
            }


            if (retentionTimeValues) {
                JSparklinesIntervalChartTableCellRenderer rtCellRenderer = new JSparklinesIntervalChartTableCellRenderer(
                        PlotOrientation.HORIZONTAL, SpectrumFactory.getInstance().getMinRT(), SpectrumFactory.getInstance().getMaxRT(), SpectrumFactory.getInstance().getMaxRT() / 50,
                        peptideShakerGUI.getSparklineColor(), peptideShakerGUI.getSparklineColor());
                relatedPsmsTable.getColumn("RT").setCellRenderer(rtCellRenderer);
                rtCellRenderer.showNumberAndChart(true, TableProperties.getLabelWidth() + 5);
                ((JSparklinesIntervalChartTableCellRenderer) relatedPsmsTable.getColumn("RT").getCellRenderer()).showReferenceLine(true, 0.02, java.awt.Color.BLACK);
            }
        } catch (Exception e) {
            peptideShakerGUI.catchException(e);
            e.printStackTrace();

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Examples of no.uib.jsparklines.renderers.JSparklinesIntervalChartTableCellRenderer

                "Starred", null, null));
        psmTable.getColumn("H").setCellRenderer(new NimbusCheckBoxRenderer());
        psmTable.getColumn("m/z").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, SpectrumFactory.getInstance().getMaxMz(), peptideShakerGUI.getSparklineColor()));
        psmTable.getColumn("Charge").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL,
                (double) ((PSMaps) peptideShakerGUI.getIdentification().getUrParam(new PSMaps())).getPsmSpecificMap().getMaxCharge(), peptideShakerGUI.getSparklineColor()));
        psmTable.getColumn("RT").setCellRenderer(new JSparklinesIntervalChartTableCellRenderer(PlotOrientation.HORIZONTAL, SpectrumFactory.getInstance().getMinRT(),
                SpectrumFactory.getInstance().getMaxRT(), SpectrumFactory.getInstance().getMaxRT() / 50, peptideShakerGUI.getSparklineColor(), peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) psmTable.getColumn("m/z").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
        ((JSparklinesBarChartTableCellRenderer) psmTable.getColumn("Charge").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
        ((JSparklinesIntervalChartTableCellRenderer) psmTable.getColumn("RT").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() + 5);
        ((JSparklinesIntervalChartTableCellRenderer) psmTable.getColumn("RT").getCellRenderer()).showReferenceLine(true, 0.02, java.awt.Color.BLACK);

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