Examples of JobDetails

Examples of beans.user.job.entity.JobDetails

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     * @return идентификатор сущности
     */
    @Override
    protected void onUpdate(Job entity, EntityDetails details,
            AuditDoc auditDoc, List<AuditDoc> auditDocList) throws ClipsServerException {
        JobDetails d = (JobDetails) details;

        if (entity.getId() == 0) {
            entity.setClient(findEntity(Client.class, d.clientID));
        } else if (d.clientID != entity.getClient().getId()) {
            throw new ClipsServerException("Попытка записи данных о работе другому пациенту");
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Examples of org.apache.airavata.model.workspace.experiment.JobDetails

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        jobExecutionContext.getNotifier().publish(new StartExecutionEvent());
        HostDescriptionType host = jobExecutionContext.getApplicationContext().
                getHostDescription().getType();
        HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) jobExecutionContext.getApplicationContext().
                getApplicationDeploymentDescription().getType();
        JobDetails jobDetails = new JobDetails();
        try {
            Cluster cluster = null;
            if (jobExecutionContext.getSecurityContext(GSISecurityContext.GSI_SECURITY_CONTEXT) != null) {
                cluster = ((GSISecurityContext) jobExecutionContext.getSecurityContext(GSISecurityContext.GSI_SECURITY_CONTEXT)).getPbsCluster();
            }
            if (cluster == null) {
                throw new GFacProviderException("Security context is not set properly");
            } else {
                log.info("Successfully retrieved the Security Context");
            }
            // This installed path is a mandetory field, because this could change based on the computing resource
            JobDescriptor jobDescriptor = GFACGSISSHUtils.createJobDescriptor(jobExecutionContext, app, cluster);

            log.info(jobDescriptor.toXML());
            data.append("jobDesc=").append(jobDescriptor.toXML());
            jobDetails.setJobDescription(jobDescriptor.toXML());

            String jobID = cluster.submitBatchJob(jobDescriptor);
            jobExecutionContext.setJobDetails(jobDetails);
            if (jobID == null) {
                jobDetails.setJobID("none");
                GFacUtils.saveJobStatus(jobExecutionContext, jobDetails, JobState.FAILED);
            } else {
                jobDetails.setJobID(jobID);
                GFacUtils.saveJobStatus(jobExecutionContext, jobDetails, JobState.SUBMITTED);
            }
            data.append(",jobId=").append(jobDetails.getJobID());

            // Now job has submitted to the resource, its up to the Provider to parse the information to daemon handler
            // to perform monitoring, daemon handlers can be accessed from anywhere
            delegateToMonitorHandlers(jobExecutionContext, (GsisshHostType) host, jobID);
            // we know this host is type GsiSSHHostType
        } catch (SSHApiException e) {
            String error = "Error submitting the job to host " + host.getHostAddress() + " message: " + e.getMessage();
            log.error(error);
            jobDetails.setJobID("none");
            GFacUtils.saveJobStatus(jobExecutionContext, jobDetails, JobState.FAILED);
            GFacUtils.saveErrorDetails(jobExecutionContext, error, CorrectiveAction.CONTACT_SUPPORT, ErrorCategory.AIRAVATA_INTERNAL_ERROR);
            throw new GFacProviderException(error, e);
        } catch (Exception e) {
            String error = "Error submitting the job to host " + host.getHostAddress() + " message: " + e.getMessage();
            log.error(error);
            jobDetails.setJobID("none");
            GFacUtils.saveJobStatus(jobExecutionContext, jobDetails, JobState.FAILED);
            GFacUtils.saveErrorDetails(jobExecutionContext, error, CorrectiveAction.CONTACT_SUPPORT, ErrorCategory.AIRAVATA_INTERNAL_ERROR);
            throw new GFacProviderException(error, e);
        } finally {
            log.info("Saving data for future recovery: ");
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Examples of org.apache.airavata.model.workspace.experiment.JobDetails

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        } catch (InterruptedException e) {
            e.printStackTrace();
        }
        try {
            // Now we are we have enough data to recover
            JobDetails jobDetails = new JobDetails();
            jobDetails.setJobDescription(jobDesc);
            jobDetails.setJobID(jobId);
            jobExecutionContext.setJobDetails(jobDetails);
            if (jobExecutionContext.getSecurityContext(GSISecurityContext.GSI_SECURITY_CONTEXT) == null) {
                try {
                    GFACGSISSHUtils.addSecurityContext(jobExecutionContext);
                } catch (ApplicationSettingsException e) {
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Examples of org.apache.airavata.model.workspace.experiment.JobDetails

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                throw new GFacException("Unable to create registry instance", e);
            }
        } else {
            registry = jobExecutionContext.getRegistry();
        }
        details = new JobDetails();
        status = new JobStatus();
        this.jobExecutionContext = jobExecutionContext;
    }
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Examples of org.apache.airavata.model.workspace.experiment.JobDetails

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                throw new GFacException("Unable to create registry instance", e);
            }
        }else{
            registry = jobExecutionContext.getRegistry();
        }
    details = new JobDetails();
    status = new JobStatus();
    this.jobExecutionContext=jobExecutionContext;
  }
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Examples of org.apache.airavata.model.workspace.experiment.JobDetails

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                jobExecutionContext.getNotifier().publish(new StartExecutionEvent());
                HostDescriptionType host = jobExecutionContext.getApplicationContext().
                        getHostDescription().getType();
                HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) jobExecutionContext.getApplicationContext().
                        getApplicationDeploymentDescription().getType();
                JobDetails jobDetails = new JobDetails();
                String taskID = jobExecutionContext.getTaskData().getTaskID();
                try {
                    Cluster cluster = null;
                    if (jobExecutionContext.getSecurityContext(SSHSecurityContext.SSH_SECURITY_CONTEXT) != null) {
                        cluster = ((SSHSecurityContext) jobExecutionContext.getSecurityContext(SSHSecurityContext.SSH_SECURITY_CONTEXT)).getPbsCluster();
                    }
                    if (cluster == null) {
                        throw new GFacProviderException("Security context is not set properly");
                    } else {
                        log.info("Successfully retrieved the Security Context");
                    }
                    // This installed path is a mandetory field, because this could change based on the computing resource
                    JobDescriptor jobDescriptor = GFACSSHUtils.createJobDescriptor(jobExecutionContext, app, cluster);

                    log.info(jobDescriptor.toXML());

                    jobDetails.setJobDescription(jobDescriptor.toXML());

                    String jobID = cluster.submitBatchJob(jobDescriptor);
                    jobExecutionContext.setJobDetails(jobDetails);
                    if (jobID == null) {
                        jobDetails.setJobID("none");
                        GFacUtils.saveJobStatus(jobExecutionContext, jobDetails, JobState.FAILED);
                    } else {
                        jobDetails.setJobID(jobID);
                        GFacUtils.saveJobStatus(jobExecutionContext, jobDetails, JobState.SUBMITTED);
                    }
                    delegateToMonitorHandlers(jobExecutionContext);
                } catch (SSHApiException e) {
                    String error = "Error submitting the job to host " + host.getHostAddress() + " message: " + e.getMessage();
                    log.error(error);
                    jobDetails.setJobID("none");
                    GFacUtils.saveJobStatus(jobExecutionContext, jobDetails, JobState.FAILED);
                    GFacUtils.saveErrorDetails(jobExecutionContext, error, CorrectiveAction.CONTACT_SUPPORT, ErrorCategory.AIRAVATA_INTERNAL_ERROR);
                    throw new GFacProviderException(error, e);
                } catch (Exception e) {
                    String error = "Error submitting the job to host " + host.getHostAddress() + " message: " + e.getMessage();
                    log.error(error);
                    jobDetails.setJobID("none");
                    GFacUtils.saveJobStatus(jobExecutionContext, jobDetails, JobState.FAILED);
                    GFacUtils.saveErrorDetails(jobExecutionContext, error, CorrectiveAction.CONTACT_SUPPORT, ErrorCategory.AIRAVATA_INTERNAL_ERROR);
                    throw new GFacProviderException(error, e);
                }
            } catch (GFacException e) {
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Examples of org.apache.airavata.model.workspace.experiment.JobDetails

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    }


    public static JobDetails getJobDetail(JobDetailResource jobDetailResource) throws RegistryException {
        if (jobDetailResource != null){
            JobDetails jobDetails = new JobDetails();
            jobDetails.setJobID(jobDetailResource.getJobId());
            jobDetails.setJobDescription(jobDetailResource.getJobDescription());
            jobDetails.setCreationTime(jobDetailResource.getCreationTime().getTime());
            StatusResource jobStatus = jobDetailResource.getJobStatus();
            jobDetails.setJobStatus(getJobStatus(jobStatus));
            StatusResource applicationStatus = jobDetailResource.getApplicationStatus();
            jobDetails.setApplicationStatus(getApplicationStatus(applicationStatus));
            List<ErrorDetailResource> errorDetails = jobDetailResource.getErrorDetails();
            jobDetails.setErrors(getErrorDetailList(errorDetails));
            jobDetails.setComputeResourceConsumed(jobDetailResource.getComputeResourceConsumed());
            return jobDetails;
        }
        return null;
    }
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Examples of org.apache.airavata.model.workspace.experiment.JobDetails

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    public void execute(JobExecutionContext jobExecutionContext) throws GFacProviderException {
        jobExecutionContext.getNotifier().publish(new StartExecutionEvent());
         ApplicationDeploymentDescriptionType app = jobExecutionContext.
                 getApplicationContext().getApplicationDeploymentDescription().getType();
        JobDetails jobDetails = new JobDetails();
        try {
          jobId = jobExecutionContext.getTaskData().getTaskID();
            jobDetails.setJobID(jobId);
            jobDetails.setJobDescription(app.toString());
            jobExecutionContext.setJobDetails(jobDetails);
            jobDetails.setJobDescription(app.toString());
            GFacUtils.saveJobStatus(jobExecutionContext,jobDetails, JobState.SETUP);
          // running cmd
            Process process = builder.start();

            Thread standardOutWriter = new InputStreamToFileWriter(process.getInputStream(), app.getStandardOutput());
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Examples of org.apache.airavata.model.workspace.experiment.JobDetails

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        jobExecutionContext.getNotifier().publish(new StartExecutionEvent());
        HostDescriptionType host = jobExecutionContext.getApplicationContext().
                getHostDescription().getType();
        HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) jobExecutionContext.getApplicationContext().
                getApplicationDeploymentDescription().getType();
        JobDetails jobDetails = new JobDetails();
       String taskID = jobExecutionContext.getTaskData().getTaskID();
        try {
            Cluster cluster = null;
            if (jobExecutionContext.getSecurityContext(GSISecurityContext.GSI_SECURITY_CONTEXT) != null) {
                cluster = ((GSISecurityContext) jobExecutionContext.getSecurityContext(GSISecurityContext.GSI_SECURITY_CONTEXT)).getPbsCluster();
            }
            if (cluster == null) {
                throw new GFacProviderException("Security context is not set properly");
            } else {
                log.info("Successfully retrieved the Security Context");
            }
            // This installed path is a mandetory field, because this could change based on the computing resource
            JobDescriptor jobDescriptor = GFACGSISSHUtils.createJobDescriptor(jobExecutionContext, app, cluster);

            log.info(jobDescriptor.toXML());
           
            jobDetails.setJobDescription(jobDescriptor.toXML());
           
            String jobID = cluster.submitBatchJob(jobDescriptor);
            jobExecutionContext.setJobDetails(jobDetails);
            if(jobID == null){
                jobDetails.setJobID("none");
                GFacUtils.saveJobStatus(jobExecutionContext, jobDetails, JobState.FAILED);
            }else{
                jobDetails.setJobID(jobID);
                GFacUtils.saveJobStatus(jobExecutionContext, jobDetails, JobState.SUBMITTED);
            }


            // Now job has submitted to the resource, its up to the Provider to parse the information to daemon handler
            // to perform monitoring, daemon handlers can be accessed from anywhere
            List<ThreadedHandler> daemonHandlers = GFacImpl.getDaemonHandlers();
            ThreadedHandler pullMonitorHandler = null;
            ThreadedHandler pushMonitorHandler = null;
            String monitorMode = ((GsisshHostType) host).getMonitorMode();
            for(ThreadedHandler threadedHandler:daemonHandlers){
                if("org.apache.airavata.gfac.monitor.handlers.GridPullMonitorHandler".equals(threadedHandler.getClass().getName())){
                    pullMonitorHandler = threadedHandler;
                    if("".equals(monitorMode) || monitorMode == null || org.apache.airavata.common.utils.Constants.PULL.equals(monitorMode)){
                        log.info("Job is launched successfully now parsing it to monitoring in pull mode, JobID Returned:  " + jobID);
                        pullMonitorHandler.invoke(jobExecutionContext);
                    }else{
                        log.error("Currently we only support Pull and Push monitoring and monitorMode should be PULL" +
                                " to handle by the GridPullMonitorHandler");
                    }
                }else if ("org.apache.airavata.gfac.monitor.handlers.GridPushMonitorHandler".equals(threadedHandler.getClass().getName())){
                    pushMonitorHandler = threadedHandler;
                    if("".equals(monitorMode) || monitorMode == null || org.apache.airavata.common.utils.Constants.PUSH.equals(monitorMode)){
                        log.info("Job is launched successfully now parsing it to monitoring in push mode, JobID Returned:  " + jobID);
                        pushMonitorHandler.invoke(jobExecutionContext);
                    }else{
                        log.error("Currently we only support Pull and Push monitoring and monitorMode should be PUSH" +
                                " to handle by the GridPushMonitorHandler");
                    }
                }
                // have to handle the GridPushMonitorHandler logic
            }
            if(pullMonitorHandler == null && pushMonitorHandler==null && ExecutionMode.ASYNCHRONOUS.equals(jobExecutionContext.getGFacConfiguration().getExecutionMode())){
                log.error("No Daemon handler is configured in gfac-config.xml, either pull or push, so monitoring will not invoked" +
                        ", execution is configured as asynchronous, so Outhandler will not be invoked");
            }
            // we know this host is type GsiSSHHostType
        } catch (SSHApiException e) {
            String error = "Error submitting the job to host " + host.getHostAddress() + " message: " + e.getMessage();
            log.error(error);
            jobDetails.setJobID("none");
          GFacUtils.saveJobStatus(jobExecutionContext, jobDetails,JobState.FAILED);
           GFacUtils.saveErrorDetails(jobExecutionContext, error, CorrectiveAction.CONTACT_SUPPORT, ErrorCategory.AIRAVATA_INTERNAL_ERROR);
            throw new GFacProviderException(error, e);
        } catch (Exception e) {
          String error = "Error submitting the job to host " + host.getHostAddress() + " message: " + e.getMessage();
           log.error(error);
            jobDetails.setJobID("none");
          GFacUtils.saveJobStatus(jobExecutionContext, jobDetails,JobState.FAILED);
           GFacUtils.saveErrorDetails(jobExecutionContext, error, CorrectiveAction.CONTACT_SUPPORT, ErrorCategory.AIRAVATA_INTERNAL_ERROR);
            throw new GFacProviderException(error, e);
        }
    }
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Examples of org.apache.airavata.model.workspace.experiment.JobDetails

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                jobExecutionContext.getNotifier().publish(new StartExecutionEvent());
                HostDescriptionType host = jobExecutionContext.getApplicationContext().
                        getHostDescription().getType();
                HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) jobExecutionContext.getApplicationContext().
                        getApplicationDeploymentDescription().getType();
                JobDetails jobDetails = new JobDetails();
                String taskID = jobExecutionContext.getTaskData().getTaskID();
                try {
                    Cluster cluster = null;
                    if (jobExecutionContext.getSecurityContext(SSHSecurityContext.SSH_SECURITY_CONTEXT) != null) {
                        cluster = ((SSHSecurityContext) jobExecutionContext.getSecurityContext(SSHSecurityContext.SSH_SECURITY_CONTEXT)).getPbsCluster();
                    }
                    if (cluster == null) {
                        throw new GFacProviderException("Security context is not set properly");
                    } else {
                        log.info("Successfully retrieved the Security Context");
                    }
                    // This installed path is a mandetory field, because this could change based on the computing resource
                    JobDescriptor jobDescriptor = GFACSSHUtils.createJobDescriptor(jobExecutionContext, app, cluster);

                    log.info(jobDescriptor.toXML());

                    jobDetails.setJobDescription(jobDescriptor.toXML());

                    String jobID = cluster.submitBatchJob(jobDescriptor);
                    jobExecutionContext.setJobDetails(jobDetails);
                    if (jobID == null) {
                        jobDetails.setJobID("none");
                        GFacUtils.saveJobStatus(jobExecutionContext, jobDetails, JobState.FAILED);
                    } else {
                        jobDetails.setJobID(jobID);
                        GFacUtils.saveJobStatus(jobExecutionContext, jobDetails, JobState.SUBMITTED);
                    }

                } catch (SSHApiException e) {
                    String error = "Error submitting the job to host " + host.getHostAddress() + " message: " + e.getMessage();
                    log.error(error);
                    jobDetails.setJobID("none");
                    GFacUtils.saveJobStatus(jobExecutionContext, jobDetails, JobState.FAILED);
                    GFacUtils.saveErrorDetails(jobExecutionContext, error, CorrectiveAction.CONTACT_SUPPORT, ErrorCategory.AIRAVATA_INTERNAL_ERROR);
                    throw new GFacProviderException(error, e);
                } catch (Exception e) {
                    String error = "Error submitting the job to host " + host.getHostAddress() + " message: " + e.getMessage();
                    log.error(error);
                    jobDetails.setJobID("none");
                    GFacUtils.saveJobStatus(jobExecutionContext, jobDetails, JobState.FAILED);
                    GFacUtils.saveErrorDetails(jobExecutionContext, error, CorrectiveAction.CONTACT_SUPPORT, ErrorCategory.AIRAVATA_INTERNAL_ERROR);
                    throw new GFacProviderException(error, e);
                }
            } catch (GFacException e) {
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