Examples of Issue


Examples of org.gephi.io.importer.api.Issue

                if (parameters.isRemoveEdgeWithWeightZero()) {
                    String id = edge.getId();
                    String sourceTargetId = edge.getSource().getId() + "-" + edge.getTarget().getId();
                    edgeMap.remove(id);
                    edgeSourceTargetMap.remove(sourceTargetId);
                    report.logIssue(new Issue(NbBundle.getMessage(ImportContainerImpl.class, "ImportContainerException_Weight_Zero_Ignored", id), Level.SEVERE));
                }
            }
        }

        //Graph EdgeDefault
        if (directedEdgesCount > 0 && undirectedEdgesCount == 0) {
            parameters.setEdgeDefault(EdgeDefault.DIRECTED);
        } else if (directedEdgesCount == 0 && undirectedEdgesCount > 0) {
            parameters.setEdgeDefault(EdgeDefault.UNDIRECTED);
        } else if (directedEdgesCount > 0 && undirectedEdgesCount > 0) {
            parameters.setEdgeDefault(EdgeDefault.MIXED);
        }

        //Is dynamic graph
        for (NodeDraftImpl node : nodeMap.values()) {
            dynamicGraph = node.getTimeInterval() != null;
            if (dynamicGraph) {
                break;
            }
        }
        if (!dynamicGraph) {
            for (EdgeDraftImpl edge : edgeMap.values()) {
                dynamicGraph = edge.getTimeInterval() != null;
                if (dynamicGraph) {
                    break;
                }
            }
        }
        if (!dynamicGraph) {
            for (AttributeColumn col : attributeModel.getNodeTable().getColumns()) {
                dynamicGraph = col.getType().isDynamicType();
                if (dynamicGraph) {
                    break;
                }
            }
            for (AttributeColumn col : attributeModel.getEdgeTable().getColumns()) {
                dynamicGraph = col.getType().isDynamicType();
                if (dynamicGraph) {
                    break;
                }
            }
        }

        //Print time interval values to report
        if (timeIntervalMin != null || timeIntervalMax != null) {
            if (timeFormat.equals(TimeFormat.DATE)) {
                try {
                    String message = "[" + (timeIntervalMin != null ? DynamicUtilities.getXMLDateStringFromDouble(timeIntervalMin) : "-inf") + ",";
                    message += (timeIntervalMax != null ? DynamicUtilities.getXMLDateStringFromDouble(timeIntervalMax) : "+inf") + "]";
                    report.log(NbBundle.getMessage(ImportContainerImpl.class, "ImportContainerLog.TimeInterval", message));
                } catch (Exception e) {
                }
            } else {
                String message = "[" + (timeIntervalMin != null ? timeIntervalMin.toString() : "-inf") + ",";
                message += (timeIntervalMax != null ? timeIntervalMax.toString() : "+inf") + "]";
                report.log(NbBundle.getMessage(ImportContainerImpl.class, "ImportContainerLog.TimeInterval", message));
            }
        }

        //Print TimeFormat
        if (dynamicGraph) {
            report.log(NbBundle.getMessage(ImportContainerImpl.class, "ImportContainerLog.TimeFormat", timeFormat.toString()));
        }

        //Remove overlapping
        if (dynamicGraph && parameters.isRemoveIntervalsOverlapping()) {
            for (NodeDraftImpl node : nodeMap.values()) {
                AttributeValue[] values = node.getAttributeRow().getValues();
                for (int i = 0; i < values.length; i++) {
                    AttributeValue val = values[i];
                    if (val.getValue() != null && val.getValue() instanceof DynamicType) {   //is Dynamic type
                        DynamicType type = (DynamicType) val.getValue();
                        type = DynamicUtilities.removeOverlapping(type);
                        node.getAttributeRow().setValue(val.getColumn(), type);
                    }
                }
            }
            for (EdgeDraftImpl edge : edgeMap.values()) {
                AttributeValue[] values = edge.getAttributeRow().getValues();
                for (int i = 0; i < values.length; i++) {
                    AttributeValue val = values[i];
                    if (val.getValue() != null && val.getValue() instanceof DynamicType) {   //is Dynamic type
                        DynamicType type = (DynamicType) val.getValue();
                        type = DynamicUtilities.removeOverlapping(type);
                        edge.getAttributeRow().setValue(val.getColumn(), type);
                    }
                }
            }
        }

        //Dynamic attributes bounds
        if (dynamicGraph && (timeIntervalMin != null || timeIntervalMax != null)) {
            for (NodeDraftImpl node : nodeMap.values()) {
                boolean issue = false;
                if (timeIntervalMin != null || timeIntervalMax != null) {
                    if (timeIntervalMin != null && node.getTimeInterval() != null && node.getTimeInterval().getLow() < timeIntervalMin) {
                        node.setTimeInterval((TimeInterval) DynamicUtilities.fitToInterval(node.getTimeInterval(), timeIntervalMin, node.getTimeInterval().getHigh()));
                        issue = true;
                    }
                    if (timeIntervalMax != null && node.getTimeInterval() != null && node.getTimeInterval().getHigh() > timeIntervalMax) {
                        node.setTimeInterval((TimeInterval) DynamicUtilities.fitToInterval(node.getTimeInterval(), node.getTimeInterval().getLow(), timeIntervalMax));
                        issue = true;
                    }
                    if (node.getTimeInterval() == null) {
                        node.setTimeInterval(new TimeInterval(timeIntervalMin, timeIntervalMax));
                    }
                }

                AttributeValue[] values = node.getAttributeRow().getValues();
                for (int i = 0; i < values.length; i++) {
                    AttributeValue val = values[i];
                    if (val.getValue() != null && val.getValue() instanceof DynamicType) {   //is Dynamic type
                        DynamicType type = (DynamicType) val.getValue();
                        if (timeIntervalMin != null && type.getLow() < timeIntervalMin) {
                            if (!Double.isInfinite(type.getLow())) {
                                issue = true;
                            }
                            node.getAttributeRow().setValue(val.getColumn(), DynamicUtilities.fitToInterval(type, timeIntervalMin, type.getHigh()));
                        }
                        if (timeIntervalMax != null && type.getHigh() > timeIntervalMax) {
                            if (!Double.isInfinite(type.getHigh())) {
                                issue = true;
                            }
                            node.getAttributeRow().setValue(val.getColumn(), DynamicUtilities.fitToInterval(type, type.getLow(), timeIntervalMax));
                        }
                    }
                }
                if (issue) {
                    report.logIssue(new Issue(NbBundle.getMessage(ImportContainerImpl.class, "ImportContainerException_TimeIntervalVerify_Node_OutOfBound", node.getId()), Level.WARNING));
                }
            }
            for (EdgeDraftImpl edge : edgeMap.values()) {
                boolean issue = false;
                if (timeIntervalMin != null || timeIntervalMax != null) {
                    if (timeIntervalMin != null && edge.getTimeInterval() != null && edge.getTimeInterval().getLow() < timeIntervalMin) {
                        edge.setTimeInterval((TimeInterval) DynamicUtilities.fitToInterval(edge.getTimeInterval(), timeIntervalMin, edge.getTimeInterval().getHigh()));
                        issue = true;
                    }
                    if (timeIntervalMax != null && edge.getTimeInterval() != null && edge.getTimeInterval().getHigh() > timeIntervalMax) {
                        edge.setTimeInterval((TimeInterval) DynamicUtilities.fitToInterval(edge.getTimeInterval(), edge.getTimeInterval().getLow(), timeIntervalMax));
                        issue = true;
                    }
                    if (edge.getTimeInterval() == null) {
                        edge.setTimeInterval(new TimeInterval(timeIntervalMin, timeIntervalMax));
                    }
                }

                AttributeValue[] values = edge.getAttributeRow().getValues();
                for (int i = 0; i < values.length; i++) {
                    AttributeValue val = values[i];
                    if (val.getValue() != null && val.getValue() instanceof DynamicType) {   //is Dynamic type
                        DynamicType type = (DynamicType) val.getValue();
                        if (timeIntervalMin != null && type.getLow() < timeIntervalMin) {
                            if (!Double.isInfinite(type.getLow())) {
                                issue = true;
                            }
                            edge.getAttributeRow().setValue(val.getColumn(), DynamicUtilities.fitToInterval(type, timeIntervalMin, type.getHigh()));
                        }
                        if (timeIntervalMax != null && type.getHigh() > timeIntervalMax) {
                            if (!Double.isInfinite(type.getHigh())) {
                                issue = true;
                            }
                            edge.getAttributeRow().setValue(val.getColumn(), DynamicUtilities.fitToInterval(type, type.getLow(), timeIntervalMax));
                        }
                    }
                }
                if (issue) {
                    report.logIssue(new Issue(NbBundle.getMessage(ImportContainerImpl.class, "ImportContainerException_TimeIntervalVerify_Edge_OutOfBound", edge.getId()), Level.WARNING));
                }
            }
        }

        return true;
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Examples of org.gephi.io.importer.api.Issue

        parameters.setSelfLoops(value);
    }

    public void setEdgeDefault(EdgeDefault edgeDefault) {
        parameters.setEdgeDefault(edgeDefault);
        report.logIssue(new Issue(NbBundle.getMessage(ImportContainerImpl.class, "ImportContainerException_Set_EdgeDefault", edgeDefault.toString()), Level.INFO));
    }
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Examples of org.gephi.io.importer.api.Issue

                try {
                    connection.close();
                    report.log("Database connection terminated");
                } catch (Exception e) { /* ignore close errors */ }
            }
            report.logIssue(new Issue("Failed to connect at " + url, Issue.Level.CRITICAL, ex));
        }
        if (connection == null) {
            report.logIssue(new Issue("Failed to connect at " + url, Issue.Level.CRITICAL));
        }

        report.log(database.getPropertiesAssociations().getInfos());
        getNodes(connection);
        getEdges(connection);
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Examples of org.gephi.io.importer.api.Issue

        Statement s = connection.createStatement();
        try {
            s.executeQuery(database.getNodeQuery());
        } catch (SQLException ex) {
            report.logIssue(new Issue("Failed to execute Node query", Issue.Level.SEVERE, ex));
            return;
        }

        ResultSet rs = s.getResultSet();
        findNodeAttributesColumns(rs);
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Examples of org.gephi.io.importer.api.Issue

        Statement s = connection.createStatement();
        try {
            s.executeQuery(database.getEdgeQuery());
        } catch (SQLException ex) {
            report.logIssue(new Issue("Failed to execute Edge query", Issue.Level.SEVERE, ex));
            return;
        }
        ResultSet rs = s.getResultSet();
        findEdgeAttributesColumns(rs);
        AttributeTable edgeClass = container.getAttributeModel().getEdgeTable();
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Examples of org.gephi.io.importer.api.Issue

            case BOOLEAN:
                try {
                    boolean val = rs.getBoolean(columnIndex);
                    draft.addAttributeValue(column, val);
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a BOOLEAN value for node attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
            case DOUBLE:
                try {
                    double val = rs.getDouble(columnIndex);
                    draft.addAttributeValue(column, val);
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a DOUBLE value for node attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
            case FLOAT:
                try {
                    float val = rs.getFloat(columnIndex);
                    draft.addAttributeValue(column, val);
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a FLOAT value for node attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
            case INT:
                try {
                    int val = rs.getInt(columnIndex);
                    draft.addAttributeValue(column, val);
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a INT value for node attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
            case LONG:
                try {
                    long val = rs.getLong(columnIndex);
                    draft.addAttributeValue(column, val);
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a LONG value for node attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
            default: //String
                try {
                    String val = rs.getString(columnIndex);
                    if (val != null) {
                        draft.addAttributeValue(column, val);
                    } else {
                        report.logIssue(new Issue("Failed to get a STRING value for node attribute '" + column.getId() + "'", Issue.Level.WARNING));
                    }
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a STRING value for node attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
        }
    }
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Examples of org.gephi.io.importer.api.Issue

            case BOOLEAN:
                try {
                    boolean val = rs.getBoolean(columnIndex);
                    draft.addAttributeValue(column, val);
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a BOOLEAN value for edge attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
            case DOUBLE:
                try {
                    double val = rs.getDouble(columnIndex);
                    draft.addAttributeValue(column, val);
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a DOUBLE value for edge attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
            case FLOAT:
                try {
                    float val = rs.getFloat(columnIndex);
                    draft.addAttributeValue(column, val);
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a FLOAT value for edge attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
            case INT:
                try {
                    int val = rs.getInt(columnIndex);
                    draft.addAttributeValue(column, val);
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a INT value for edge attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
            case LONG:
                try {
                    long val = rs.getLong(columnIndex);
                    draft.addAttributeValue(column, val);
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a LONG value for edge attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
            default: //String
                try {
                    String val = rs.getString(columnIndex);
                    if (val != null) {
                        draft.addAttributeValue(column, val);
                    } else {
                        report.logIssue(new Issue("Failed to get a BOOLEAN value for edge attribute '" + column.getId() + "'", Issue.Level.WARNING));
                    }
                } catch (SQLException ex) {
                    report.logIssue(new Issue("Failed to get a STRING value for edge attribute '" + column.getId() + "'", Issue.Level.SEVERE, ex));
                }
                break;
        }
    }
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Examples of org.gephi.io.importer.api.Issue

                        break;
                    case Types.VARCHAR:
                        type = AttributeType.STRING;
                        break;
                    default:
                        report.logIssue(new Issue("Unknown SQL Type " + metaData.getColumnType(i + 1) + ", STRING used.", Issue.Level.WARNING));
                        break;
                }
                report.log("Node attribute found: " + columnName + "(" + type + ")");
                nodeClass.addColumn(columnName, type);
            }
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Examples of org.gephi.io.importer.api.Issue

                        break;
                    case Types.VARCHAR:
                        type = AttributeType.STRING;
                        break;
                    default:
                        report.logIssue(new Issue("Unknown SQL Type " + metaData.getColumnType(i + 1) + ", STRING used.", Issue.Level.WARNING));
                        break;
                }

                report.log("Edge attribute found: " + columnName + "(" + type + ")");
                edgeClass.addColumn(columnName, type);
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Examples of org.gephi.io.importer.api.Issue

        this.report = new Report();
        LineNumberReader lineReader = ImportUtils.getTextReader(reader);
        try {
            importData(lineReader);
        } catch (Exception e) {
            report.logIssue(new Issue(e, Issue.Level.SEVERE));
        }
        return !cancel;
    }
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