Examples of ISequence

com.dmissoh.biologic.models.ISequence
org.carrot2.text.suffixtree.ISequence
A sequence of elements from which a {@link SuffixTree} can be built. Elements areindexed with integers starting at position 0. Elements themselves must be represented as integers, where equal values at different indices indicate equal objects, whatever the underlying objects might be.

Examples of com.dmissoh.biologic.models.ISequence

  public List<Family> getFamilies() {
    return getInputAsSequence().getFamilies();
  }


  public void save(String selectedFile) {
    ISequence sequence = ((SequenceEditorInput) getEditorInput())
        .getSequence();
    ExportUtils.getInstance().save(selectedFile, sequence);
  }

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Examples of com.dmissoh.biologic.models.ISequence

        .getActiveWorkbenchWindow().getActivePage().getActivePart();
    if (part instanceof SequenceEditor) {
      SequenceEditor editor = (SequenceEditor) part;
      Object inputObj = editor.getInputAsSequence();
      if (inputObj instanceof ISequence) {
        ISequence sequence = (ISequence) inputObj;
        if (sequence != null && sequence.getLogEntries() != null
            && !sequence.getLogEntries().isEmpty()) {
          FileDialog dialog = new FileDialog(window.getShell(),
              SWT.SAVE);
          dialog.setFileName("backup.log");
          String[] extentions = new String[] { "*.log", "*.*" };
          dialog.setFilterExtensions(extentions);

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Examples of com.dmissoh.biologic.models.ISequence

    }
    return contents.toString();
  }


  public ISequence convertBusinessToStored(ISequence sequence) {
    ISequence storedSequence = new SequenceStoreObject();
    storedSequence.setDescription(sequence.getDescription());
    storedSequence.setLogEntries(sequence.getLogEntries());
    storedSequence.setStartTime(sequence.getStartTime());
    storedSequence.setEndTime(sequence.getEndTime());
    storedSequence.setLive(sequence.isLive());
    return storedSequence;
  }

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Examples of org.carrot2.text.suffixtree.ISequence

        public void buildSuffixTree()
        {
            this.stateOriginDocument.clear();


            final LeafStateMarker marker = new LeafStateMarker();
            final ISequence seq = new IntegerSequence(input.buffer, 0, input.elementsCount);
            this.stree = SuffixTreeBuilder.from(seq)
                .withProgressCallback(marker)
                .withStateCallback(marker)
                .build();
        }

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