Examples of IIntArray

stallone.api.ints.IIntArray
TODO: change this copy paste documentation This is a joint interface for all primitive double containers with a fixed order of elements, e.g. arrays, tables, lists. In principle real-valued tensors can also be handled by this object, although we currently provide no method to directly access more than two indexes in order to keep the interface small. Single-index based access should work on higher-order tensors as well. All IDoubleArray's have a sequence in which individual elements can be iterated. The implementing object defines this sequence. Index-based methods such as get(i), set(i, x), and the iterator operate based on this sequence. This interface is the standard way of exchanging real-valued double containers, in order to make all Classes operating with such objects compatible. This option was chosen in order to prefer flexibility and ease-to-use over strict type specificity Methods operating with double containers may return more specific objects, but should accept IDoubleArray (or IComplexArray, see below) as parameters If you want to operate with complex numbers, check out IComplexArray @author noe

Examples of stallone.api.ints.IIntArray

        return (res/(double)centers.size());
    }


    public IDoubleArray membershipToState(IClustering crisp, int state)
    {
        IIntArray clusterIndexes = crisp.getClusterIndexes();
        IDoubleArray res = Doubles.create.array(clusterIndexes.size());
        for (int i=0; i<res.size(); i++)
        {
            if (clusterIndexes.get(i) == state)
                res.set(i, 1);
            else
                res.set(i, 0);
        }

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Examples of stallone.api.ints.IIntArray


        IClustering cluster = Cluster.util.densityBased(obscat, nstates);


        System.out.println("done.");


        IIntArray ci = cluster.getClusterIndexes();
        IDoubleArray[] res = new IDoubleArray[nstates];
        for (int state=0; state<nstates; state++)
        {
            IParameterEstimator estimator = Statistics.create.parameterEstimatorGaussian1D();
            res[state] = estimator.estimate(obscat, Cluster.util.membershipToState(cluster, state));

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Examples of stallone.api.ints.IIntArray

    }


    public IIntArray giantComponent(IDoubleArray P)
    {
        List<IIntArray> C = connectedComponents(P);
        IIntArray largest = C.get(0);
        int size = C.get(0).size();
        for (int i=1; i<C.size(); i++)
        {
            if (C.get(i).size() > size)
            {
                largest = C.get(i);
                size = largest.size();
            }
        }
        return largest;
    }

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Examples of stallone.api.ints.IIntArray

    }


    public IDoubleArray estimateCmilestoning(IIntArray traj, Iterable<IIntArray> cores, int lag)
    {
        MilestoningFilter filter = new MilestoningFilter(cores);
        IIntArray filteredTraj = filter.filter(traj);
        return estimateC(filteredTraj, lag);
    }

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Examples of stallone.api.ints.IIntArray

        visited[s] = true;


        while (todo.size() > 0)
        {
            int v = ((Integer) todo.remove(0)).intValue();
            IIntArray neighbors = g.getNeighbors(v);
            for (int i = 0; i < neighbors.size(); i++)
            {
                int neighbor = neighbors.get(i);
                //System.out.println(v+":"+distances[v]+" -> "+adjList[v][i]+":"+distances[adjList[v][i]]);
                if (!visited[neighbor])
                {
                    distances[neighbor] = distances[v] + 1;
                    predecessors[neighbor] = v;

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Examples of stallone.api.ints.IIntArray


    @Override
    public IIntArray load()
    {
        //System.out.println("loading "+filename+" size = "+size()+" firstTime = "+times.get(0));
        IIntArray res = Ints.create.array(size());


        int firstTime = times.get(0);
        int currentTime = times.get(0);
        int lastData = data.get(0);
        res.set(currentTime-firstTime, lastData);


        for (int i=1; i<times.size(); i++)
        {
            while(currentTime < times.get(i))
            {
                //System.out.println(i+" "+currentTime+"\t"+firstTime+"\t"+(currentTime-firstTime)+"\t"+times.get(i));
                res.set(currentTime-firstTime, lastData);
                currentTime++;
            }
            if (currentTime == times.get(i))
            {
                lastData = data.get(i);
                res.set(currentTime-firstTime, lastData);
                currentTime++;
            }
        }
        return res;
    }

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Examples of stallone.api.ints.IIntArray

    {
        int N = dtraj.size();
        List<IIntArray> res = new ArrayList();
        for (int s = 0; s < tau; s += dt)
        {
            IIntArray I = intsNew.arrayRange(s, N, tau);
            res.add(ints.subToNew(dtraj, I));
        }
        return res;
    }

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Examples of stallone.api.ints.IIntArray

            {
                if (!Ints.util.contains(target, j) && A.get(j,j) == 0)
                    zeros.append(j);
            }


        IIntArray nonzeros = Ints.util.removeValueToNew(Ints.create.listRange(0, A.rows()), zeros);


        // clean matrix
        IDoubleArray Aclean = A.view(nonzeros.getArray(), nonzeros.getArray());


        // rhs
        IDoubleArray b = Doubles.create.array(A.rows());
        for (int i=0; i<b.size(); i++)
            b.set(i, -1);
        for (int i=0; i<target.size(); i++)
            b.set(target.get(i), 0);


        // clean vector
        IDoubleArray bclean = Doubles.util.subToNew(b, nonzeros);
        // Attention: we had done the following here... does this make sense??
        // int[] tmp = {0};
        // DoubleMatrix2D Bclean = B.viewSelection(nonzeros, tmp);


        IDoubleArray X = Algebra.util.solve(Aclean, bclean);


        // reshuffle x into full vector
        this.mfpts = Doubles.create.array(T.rows(), Double.NaN);
        for (int i=0; i<nonzeros.size(); i++)
            mfpts.set(nonzeros.get(i), X.get(i));
    }

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Examples of stallone.api.ints.IIntArray

        {
            try
            {
                loader.close();


                IIntArray res = loader.load();


                itraj++;
                if (itraj < numberOfSequences())
                {
                    loader.setSource(sources.get(itraj));

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Examples of stallone.api.ints.IIntArray

    {
        if (!(o instanceof IIntArray))
        {
            return (false);
        }
        IIntArray oo = (IIntArray) o;
        for (int i = 0; i < oo.size(); i++)
        {
            if (oo.get(i) != this.get(i))
            {
                return (false);
            }
        }
        return (true);

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