Examples of GobyAlignmentQueryReader

Examples of org.broad.igv.goby.GobyAlignmentQueryReader

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            }
        } else if (typeString.endsWith(".bam.list") || pathLowerCase.endsWith(".sam.list")) {
            reader = getBamListReader(locator.getPath(), requireIndex);
        } else if (GobyAlignmentQueryReader.supportsFileType(locator.getPath())) {
            try {
                reader = new GobyAlignmentQueryReader(locator.getPath());
            } catch (IOException e) {
                throw new RuntimeException("Cannot load Goby alignment " + locator.getPath(), e);

            }
        } else if (Ga4ghAlignmentReader.supportsFileType(locator.getType())) {
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