Examples of GOIofSIFParameterDialog

Examples of org.gvt.gui.GOIofSIFParameterDialog

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    this.selectedRuleTypes = selectedRuleTypes;
  }

  public void run()
  {
    GOIofSIFParameterDialog dialog = new GOIofSIFParameterDialog(main.getShell(),
      SIFGraph.getPossibleRuleTypes(BioPAXLevel.L2),
      selectedRuleTypes,
      siffile,
      genesfile,
      limit,
      directed);

    if (dialog.open())
    {
      siffile = dialog.getSiffile();
      genesfile = dialog.getGenefile();
      limit = dialog.getLimit();
      directed = dialog.getDirected();

      SIFReader sifReader = new SIFReader(selectedRuleTypes);
      BasicSIFGraph graph = (BasicSIFGraph) sifReader.readXMLFile(new File(siffile));

      if (graph.getNodes().isEmpty())
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Examples of org.gvt.inspector.GOIofSIFParameterDialog

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    this.selectedRuleTypes = selectedRuleTypes;
  }

  public void run()
  {
    GOIofSIFParameterDialog dialog = new GOIofSIFParameterDialog(main.getShell(),
      SIFGraph.getPossibleRuleTypes(),
      selectedRuleTypes,
      siffile,
      genesfile,
      limit,
      directed);

    if (dialog.open())
    {
      siffile = dialog.getSiffile();
      genesfile = dialog.getGenefile();
      limit = dialog.getLimit();
      directed = dialog.getDirected();

      SIFReader sifReader = new SIFReader(selectedRuleTypes);
      BasicSIFGraph graph = (BasicSIFGraph) sifReader.readXMLFile(new File(siffile));

      if (graph.getNodes().isEmpty())
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