Examples of GFacProviderException

Examples of org.apache.airavata.gfac.provider.GFacProviderException

                    .append(String.valueOf(returnValue));


            log.info(buf.toString());


        } catch (IOException io) {
            throw new GFacProviderException(io.getMessage(), io,jobExecutionContext);
        } catch (InterruptedException e) {
            throw new GFacProviderException(e.getMessage(), e, jobExecutionContext);
        }
    }

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Examples of org.apache.airavata.gfac.provider.GFacProviderException

            String stdOutStr = GFacUtils.readFileToString(app.getStandardOutput());
            String stdErrStr = GFacUtils.readFileToString(app.getStandardError());
      Map<String, Object> output = jobExecutionContext.getOutMessageContext().getParameters();
            OutputUtils.fillOutputFromStdout(output, stdOutStr, stdErrStr);
        } catch (XmlException e) {
            throw new GFacProviderException("Cannot read output:" + e.getMessage(), e, jobExecutionContext);
        } catch (IOException io) {
            throw new GFacProviderException(io.getMessage(), io, jobExecutionContext);
        } catch (Exception e){
          throw new GFacProviderException("Error in retrieving results",e,jobExecutionContext);
        }
    }

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Examples of org.apache.airavata.gfac.provider.GFacProviderException

                    }


                }
            } catch (URISyntaxException e) {
                log.error(e.getMessage());
                throw new GFacProviderException(e.getMessage(), e, jobExecutionContext);
            } catch (ToolsException e) {
                log.error(e.getMessage());
                throw new GFacProviderException(e.getMessage(), e, jobExecutionContext);
            }
            outputNew.getParameters().put(paramName, actualParameter);
        }
        jobExecutionContext.setOutMessageContext(outputNew);
    }

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Examples of org.apache.airavata.gfac.provider.GFacProviderException

                    if(cpuCount>0){
                        app.setCpuCount(cpuCount);
                    }
                } catch (NullPointerException e) {
                    log.debug("No Value sent in WorkflowContextHeader for CPU Count, value in the Deployment Descriptor will be used");
                    new GFacProviderException("No Value sent in WorkflowContextHeader for Node Count, value in the Deployment Descriptor will be used",e);
                }
                try {
                    int nodeCount = currentContextHeader.getWorkflowSchedulingContext().getApplicationSchedulingContextArray()[0].getNodeCount();
                    if(nodeCount>0){
                        app.setNodeCount(nodeCount);
                    }
                } catch (NullPointerException e) {
                    log.debug("No Value sent in WorkflowContextHeader for Node Count, value in the Deployment Descriptor will be used");
                     new GFacProviderException("No Value sent in WorkflowContextHeader for Node Count, value in the Deployment Descriptor will be used",e);
                }
                try {
                    String queueName = currentContextHeader.getWorkflowSchedulingContext().getApplicationSchedulingContextArray()[0].getQueueName();
                    if (queueName != null) {
                        if(app.getQueue() == null){
                            QueueType queueType = app.addNewQueue();
                            queueType.setQueueName(queueName);
                        }else{
                            app.getQueue().setQueueName(queueName);
                        }
                    }
                } catch (NullPointerException e) {
                    log.debug("No Value sent in WorkflowContextHeader for Node Count, value in the Deployment Descriptor will be used");
                     new GFacProviderException("No Value sent in WorkflowContextHeader for Node Count, value in the Deployment Descriptor will be used",e);
                }
                try {
                    int maxwallTime = currentContextHeader.getWorkflowSchedulingContext().getApplicationSchedulingContextArray()[0].getMaxWallTime();
                    if(maxwallTime>0){
                        app.setMaxWallTime(maxwallTime);
                    }
                } catch (NullPointerException e) {
                    log.debug("No Value sent in WorkflowContextHeader for Node Count, value in the Deployment Descriptor will be used");
                     new GFacProviderException("No Value sent in WorkflowContextHeader for Node Count, value in the Deployment Descriptor will be used",e);
                }
            }
        }
//        if(currentContextHeader.getWorkflowOutputDataHandling() != null){
//            if(currentContextHeader.getWorkflowOutputDataHandling().getApplicationOutputDataHandlingArray().length != 0)

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Examples of org.apache.airavata.gfac.provider.GFacProviderException

      File runscript = createShellScript(jobExecutionContext);
      SCPFileTransfer fileTransfer = securityContext.getSSHClient().newSCPFileTransfer();
      GFacUtils.updateApplicationJobStatus(jobExecutionContext, jobID, ApplicationJobStatus.STAGING);
      fileTransfer.upload(runscript.getAbsolutePath(), remoteFile);
    } catch (IOException e) {
      throw new GFacProviderException(e.getLocalizedMessage(), e);
    }
  }

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Examples of org.apache.airavata.gfac.provider.GFacProviderException

        log.info("Process finished with return value of zero.");
      }
      
      GFacUtils.updateApplicationJobStatus(jobExecutionContext, jobID, ApplicationJobStatus.FINISHED);
    } catch (ConnectionException e) {
      throw new GFacProviderException(e.getMessage(), e);
    } catch (TransportException e) {
      throw new GFacProviderException(e.getMessage(), e);
    } catch (IOException e) {
      throw new GFacProviderException(e.getMessage(), e);
    }finally{
      securityContext.closeSession(session);
    }


  }

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Examples of org.apache.airavata.gfac.provider.GFacProviderException

            isWhirrBasedDeployment = true;
        } else {
            String hadoopConfigDirPath = (String)inMessageContext.getParameter("HADOOP_CONFIG_DIR");
            File hadoopConfigDir = new File(hadoopConfigDirPath);
            if (!hadoopConfigDir.exists()){
                throw new GFacProviderException("Specified hadoop configuration directory doesn't exist.");
            } else if (FileUtils.listFiles(hadoopConfigDir, null, null).size() <= 0){
                throw new GFacProviderException("Cannot find any hadoop configuration files inside specified directory.");
            }


            this.hadoopConfigDir = hadoopConfigDir;
        }
    }

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Examples of org.apache.airavata.gfac.provider.GFacProviderException

                }
            }
        } catch (Exception e) {
            String errMessage = "Error occurred during Map-Reduce job execution.";
            logger.error(errMessage, e);
            throw new GFacProviderException(errMessage, e);
        }
    }

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Examples of org.apache.airavata.gfac.provider.GFacProviderException


            log.debug("RSL = " + rsl);
            GramJob job = new GramJob(rsl);
            return job;
        } catch (ToolsException te) {
            throw new GFacProviderException(te.getMessage(), te, jobExecutionContext);
        }
    }

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Examples of org.apache.airavata.gfac.provider.GFacProviderException


                    log.info("Invalid script reply received. Re-submitting job, id - " + job.getIDAsString());
                    try {
                        reSubmitJob(gateKeeper, jobExecutionContext, host);
                    } catch (GFacException e) {
                        throw new GFacProviderException
                                ("Error during re-submission. Original job submission data - " + errorMsg,  e);
                    }
                    return;
                }


            } else if (listener.getError() == GRAMProtocolErrorConstants.ERROR_AUTHORIZATION) {


                // re-submit with renewed credentials
                if (!authorisationFailedAttempt) {
                    authorisationFailedAttempt = true;
                    log.info("Authorisation error contacting provider. Re-submitting job with renewed credentials.");


                    try {
                        renewCredentials(jobExecutionContext);
                        reSubmitJob(gateKeeper, jobExecutionContext, host);
                    } catch (GFacException e) {
                        throw new GFacProviderException
                                ("Error during re-submission. Original job submission data - " + errorMsg,  e);
                    }


                    return;
                }

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