Package gem

Examples of gem.PlotForTissue2$Group

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    Option numMapTasksOpt = obuilder.withLongName("numMap").withRequired(false).withArgument(
      abuilder.withName("numMap").withMinimum(1).withMaximum(1).create()).withDescription(
      "The number of map tasks").withShortName("u").create();
   
    Group group = gbuilder.withName("Options").withOption(inputOpt).withOption(clustersOpt).withOption(
      outputOpt).withOption(measureClassOpt).withOption(convergenceDeltaOpt).withOption(maxIterationsOpt)
        .withOption(kOpt).withOption(mOpt).withOption(vectorClassOpt).withOption(overwriteOutput).withOption(
          helpOpt).create();
   
    try {
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    Option vectorClassOpt = obuilder.withLongName("vectorclass").withRequired(true).withShortName("e")
        .withArgument(abuilder.withName("vectorclass").withMinimum(1).withMaximum(1).create())
        .withDescription("Class name of vector implementation to use.").create();
   
    Group group = gbuilder.withName("Options").withOption(inputOpt).withOption(clustersOpt).withOption(
      outputOpt).withOption(measureClassOpt).withOption(convergenceDeltaOpt).withOption(maxIterOpt)
        .withOption(numMapOpt).withOption(numRedOpt).withOption(doCanopyOpt).withOption(mOpt).withOption(
          vectorClassOpt).withOption(helpOpt).create();
   
    try {
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        .withDescription("Max iterations to run (or until convergence). Default 10").create();
   
    Option helpOpt = obuilder.withLongName("help").withDescription("Print out help").withShortName("h")
        .create();
   
    Group group = gbuilder.withName("Options").withOption(inputOpt).withOption(outputOpt).withOption(
      topicsOpt).withOption(wordsOpt).withOption(topicSmOpt).withOption(maxIterOpt).withOption(numReducOpt)
        .withOption(overwriteOutput).withOption(helpOpt).create();
    try {
      Parser parser = new Parser();
      parser.setGroup(group);
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    initFilesOption = new MultiPropertyOption(
      "-i", "File to run before other commands", 'I', false);

    new PropertyOption();
    Group allOptions =
      new GroupBuilder().withOption(confOptions).withOption(initFilesOption)
      .withOption(isSilentOption).withOption(isHelpOption)
      .withOption(execOption).withOption(fileOption).create();
    parser.setGroup(allOptions);
  }
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        argBuilder.withMinimum(1).withMaximum(1).create());

    builder.reset();
    Option isHelpOption =  builder.withShortName("h").withLongName("help").withDescription("help").create();
    new PropertyOption();
    Group allOptions = new GroupBuilder().withOption(isHelpOption).withOption(execOption).withOption(fileOption).withOption(grpOption).withOption(permOption).create();

    Parser parser = new Parser();
    parser.setGroup(allOptions);
    CommandLine cmdLine = null;
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      "Method of processing: sequential|mapreduce").withShortName("method").create();
    Option encodingOpt = obuilder.withLongName("encoding").withArgument(
      abuilder.withName("encoding").withMinimum(1).withMaximum(1).create()).withDescription(
      "(Optional) The file encoding.  Default value: UTF-8").withShortName("e").create();
   
    Group group = gbuilder.withName("Options").withOption(minSupportOpt).withOption(inputDirOpt).withOption(
      outputOpt).withOption(maxHeapSizeOpt).withOption(numGroupsOpt).withOption(methodOpt).withOption(
      encodingOpt).withOption(helpOpt).withOption(treeCacheOpt).withOption(recordSplitterOpt).create();
    try {
      Parser parser = new Parser();
      parser.setGroup(group);
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    for (Option opt : options) {
      gBuilder = gBuilder.withOption(opt);
    }

    Group group = gBuilder.create();

    CommandLine cmdLine;
    try {
      Parser parser = new Parser();
      parser.setGroup(group);
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    Option charsetOpt = obuilder.withLongName("charset").withRequired(true).withArgument(
      abuilder.withName("charset").withMinimum(1).withMaximum(1).create()).withDescription(
      "The name of the character encoding of the input files").withShortName("c").create();
   
    Group group = gbuilder.withName("Options").withOption(analyzerNameOpt).withOption(charsetOpt).withOption(
      outputDirOpt).withOption(parentOpt).withOption(helpOpt).create();
    try {
     
      Parser parser = new Parser();
      parser.setGroup(group);
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            .withRequired(true)
            .withArgument(argumentBuilder.withName("number").withMaximum(1).create())
            .withDescription("the number of target categories to be considered")
            .create();

    Group normalArgs = new GroupBuilder()
            .withOption(help)
            .withOption(quiet)
            .withOption(inputFile)
            .withOption(outputFile)
            .withOption(target)
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            .withRequired(true)
            .withArgument(argumentBuilder.withName("model").withMaximum(1).create())
            .withDescription("where to get a model")
            .create();

    Group normalArgs = new GroupBuilder()
            .withOption(help)
            .withOption(quiet)
            .withOption(auc)
            .withOption(scores)
            .withOption(confusion)
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  • com.sun.xml.bind.v2.schemagen.xmlschema.Particle
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