Examples of FameCorrection

net.sf.mzmine.modules.deconvolutedanalysis.famealignment.FameCorrection
Keeps a store of discovered FAME markers. The implementation of `ChromatographicPeak` is a hack to allow easy presentation of retention correction results in the MZmine table structure.

Examples of net.sf.mzmine.modules.deconvolutedanalysis.famealignment.FameCorrection

                  .getElementName()));
      double retentionIndex = Double
          .parseDouble(attrs
              .getValue(RawDataElementName_2_5_FiehnlabFork.RETENTION_INDEX
                  .getElementName()));
      partialCorrectionResults.put(name, new FameCorrection(null,
          retentionTime, (int) retentionIndex));
    }
  }

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Examples of net.sf.mzmine.modules.deconvolutedanalysis.famealignment.FameCorrection

          int idx = Arrays.asList(FameData.FAME_NAMES).indexOf(name);
          return FameData.FAME_RETENTION_INDICES[idx];
      }
    } else {
      RawDataFile file = getColumnDataFile(col);
      FameCorrection correction = (FameCorrection) peakListRow
          .getPeak(file);


      if (correction == null)
        return null;


      switch (getDataFileColumn(col)) {
        case RT :
          return correction.getRetentionTime();
      }
    }


    return null;
  }

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