Examples of ExperimentVariables

org.jamesii.core.experiments.variables.ExperimentVariables
The variables (parameters) of an experiment. The variables are organised in levels. Per level you can have any number of variables which are modified in parallel as soon as there is no more change on the sub level which will be reset in this case. @author Jan Himmelspach @author Roland Ewald

Examples of org.jamesii.core.experiments.variables.ExperimentVariables

   * @param variables
   *          the variables
   */
  public static void createExperimentVariablesTree(DefaultMutableTreeNode root,
      ExperimentVariables variables) {
    ExperimentVariables vars = variables;


    DefaultMutableTreeNode node = root;


    while (vars != null) {


      DefaultMutableTreeNode node2;
      node.add(node2 =
          new DefaultMutableTreeNode(String.format("<html><b>%s</b> </html>",
              vars.getName())));


      for (ExperimentVariable<?> var : vars.getVariables()) {
        node2.add(new DefaultMutableTreeNode(String.format(
            "<html><b>%s</b> </html>", var.getName())));
      }


      node = node2;
      vars = vars.getSubLevel();


    }
  }

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Examples of org.jamesii.core.experiments.variables.ExperimentVariables

    public ExperimentVariablesTreeModel(ExperimentVariables variables) {
      super();
      root = variables;
      // TODO sr137: evaluate whether this is needed
      if (root == null) {
        root = new ExperimentVariables();
      }
    }

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Examples of org.jamesii.core.experiments.variables.ExperimentVariables


    this.add(vBox, BorderLayout.LINE_START);
  }


  public ExperimentVariables getExperimentVariables() {
    ExperimentVariables exp = new ExperimentVariables();
    for (ExperimentVariable<?> e : variables) {
      exp.addVariable(e);
    }
    return exp;
  }

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Examples of org.jamesii.core.experiments.variables.ExperimentVariables


  @Override
  public void execute() {


    // Check whether the configuration of this experiment is meaningful
    ExperimentVariables expVars = exp.getExperimentVariables();
    if (expVars != null && ExperimentVariables.containsSteerer(expVars)) {
      ApplicationLogger
          .log(Level.INFO,
              "Will not configure experiment, it already contains a steerer variable.");
      configWindow.getSelectionTreeSet().generateFactoryCombinations();
      return;
    }


    // TODO add dialog for steerer selection and configuration
    ISimSpaceExplorer explorer =
        new SimpleSimSpaceExplorer(configWindow.getSelectionTreeSet());


    // TODO this should be editable via the GUI
    Set<BaseVariable<?>> expModelVars = explorer.getModelVariables();
    expModelVars.add(new IntVariable("numOfReactants", 5, 1, 10, 2));
    expModelVars.add(new IntVariable("numOfSpecies", 5, 1, 10, 2));
    expModelVars.add(new IntVariable("ReactPerSpecies", 2, 1, 5, 1));


    // Check whether the experiment is already set up with some other variables
    ExperimentVariables newExpVars = new ExperimentVariables();
    if (expVars != null) {
      newExpVars.setSubLevel(expVars);
    }


    List<IExperimentSteerer> steerers = new ArrayList<>();
    steerers.add(explorer);
    newExpVars.addVariable(new ExperimentSteererVariable<>(
        "SimSpExSteererVar", IExperimentSteerer.class, explorer,
        new SequenceModifier<>(steerers)));


    // The steerer's experiment variables are on the lowest level, they shall be
    // used for every defined setup
    newExpVars.getLowestSubLevel().setSubLevel(
        new SteeredExperimentVariables<>(
            IExperimentSteerer.class));
    exp.setExperimentVariables(newExpVars);
  }

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Examples of org.jamesii.core.experiments.variables.ExperimentVariables


  /**
   * Configure experiment steering.
   */
  protected void configureExperimentSteering() {
    ExperimentVariables newExpVars = new ExperimentVariables();
    List<IExperimentSteerer> steerers = new ArrayList<>();
    steerers.add(simSpaceExplorer);
    newExpVars.addVariable(new ExperimentSteererVariable<>("SimSpExSteererVar",
        IExperimentSteerer.class, simSpaceExplorer, new SequenceModifier<>(
            steerers)));
    newExpVars.setSubLevel(new SteeredExperimentVariables<>(
        IExperimentSteerer.class));
    experiment.setExperimentVariables(newExpVars);
  }

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Examples of org.jamesii.core.experiments.variables.ExperimentVariables


  /**
   * Test steerer exp var.
   */
  public void testSteererExpVar() {
    ExperimentVariables expVariables =
        getTestExperiment().getExperimentVariables();
    expVariables.init(expVariables);
    List<TestExecSetup> paramSetups = getSetups(expVariables);
    int firstHalf = paramSetups.size() >> 1;
    for (int i = 0; i < firstHalf; i++) {
      assertEquals(
          steerer1,

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Examples of org.jamesii.core.experiments.variables.ExperimentVariables


  @Override
  public T next(ExperimentVariables variables) throws NoNextVariableException {


    // move, link variables to the environment of the math expression
    ExperimentVariables vars = variables;


    StringBuilder level = new StringBuilder();


    while (vars != null) {
      for (ExperimentVariable<?> v : vars.getVariables()) {
        environment.setValue(level + v.getName(), v.getValue());
      }
      vars = vars.getSubLevel();
      level.append(".");
    }


    // compute the math expression
    ValueNode<T> result = getMathExpression().calc(environment);

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Examples of org.jamesii.core.experiments.variables.ExperimentVariables

    upperExpSteererVariable =
        new ExperimentSteererVariable<>("steererVar", getSteererClass(),
            newSteerer1, modifier);


    // Add experiment steerer variable as first variable
    ExperimentVariables expVars = getTestExperiment().getExperimentVariables();
    ExperimentVariables newLevel = new ExperimentVariables();
    newLevel.addVariable(upperExpSteererVariable);
    newLevel.setSubLevel(expVars);
    getTestExperiment().setExperimentVariables(newLevel);


    // Add two integer experiment variable for testing
    // ExperimentVariable<Integer> x1 = new ExperimentVariable<Integer>("x1",
    // -1, new IncrementModifierInteger(1, 1, 1));


    lowerSteererExpVars = new SteeredExperimentVariables<>(getSteererClass());
    ExperimentVariables lLevel =
        getTestExperiment().getExperimentVariables().getLowestSubLevel();
    lLevel.setSubLevel(lowerSteererExpVars);


  }

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Examples of org.jamesii.core.experiments.variables.ExperimentVariables


  /**
   * Test steerer exp var.
   */
  public void testSteererExpVar() {
    ExperimentVariables expVariables =
        getTestExperiment().getExperimentVariables();
    expVariables.init(expVariables);
    List<TestExecSetup> paramSetups = getSetups(expVariables);
    int firstHalf = paramSetups.size() >> 1;
    for (int i = 0; i < firstHalf; i++) {
      assertEquals(
          newSteerer1,

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Examples of org.jamesii.core.experiments.variables.ExperimentVariables

    expSteererVariable =
        new ExperimentSteererVariable<>("steererVar", getSteererClass(),
            steerer1, modifier);


    // Add experiment steerer variable as first variable
    ExperimentVariables expVars = getTestExperiment().getExperimentVariables();
    ExperimentVariables newLevel = new ExperimentVariables();
    newLevel.addVariable(expSteererVariable);
    newLevel.setSubLevel(expVars);
    getTestExperiment().setExperimentVariables(newLevel);


    steererExpVars = new SteeredExperimentVariables<>(getSteererClass());
    ExperimentVariables lLevel =
        getTestExperiment().getExperimentVariables().getLowestSubLevel();
    lLevel.setSubLevel(steererExpVars);


  }

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