Examples of Experiment

cnslab.cnsnetwork.Experiment
Experiment consists of sub experiment. @version $Date: 2012-08-04 20:43:22 +0200 (Sat, 04 Aug 2012) $ $Rev: 104 $ $Author: croft $ @author Yi Dong @author David Wallace Croft
com.google.api.ads.adwords.axis.v201306.cm.Experiment
Class representing a experiment for the ExperimentService.
com.google.api.ads.adwords.axis.v201309.cm.Experiment
Class representing a experiment for the ExperimentService.
com.google.api.ads.adwords.axis.v201402.cm.Experiment
Class representing a experiment for the ExperimentService.
com.google.api.ads.adwords.axis.v201406.cm.Experiment
Class representing a experiment for the ExperimentService.
com.google.api.adwords.v201306.cm.Experiment
Class representing a experiment for the ExperimentService.
com.google.api.adwords.v201309.cm.Experiment
Class representing a experiment for the ExperimentService.
com.infoclinika.mssharing.model.internal.entity.Experiment
@author Stanislav Kurilin
com.opensymphony.async.model.Experiment
Experiment @author Jason Carreira
desmoj.core.simulator.Experiment
eu.planets_project.pp.plato.model.Experiment
An experiment is where all configuration is, or rather will be stored concerning the actual execution of PLANETS services like PA migration services, etc. At the moment it is only a textual description, but this will be complimented by (probably quite complicated ;) service description objects also containing parameter settings and the like. @author Christoph Becker
eu.planets_project.tb.api.model.Experiment
-Phases: Every Experiment consists out of four phases Setup, Approval, Execution and Analysis Every Phase may consist itself of multiple steps (e.g. setup experiment includes: fill in basic properties, design a workflow, etc.). Within this steps it's possible to navigate forward and backward - after a phase has completed its data may not be modified any longer.
- Status: Every phase contains a status as well as there's an overall status status for the entire Experiment - ExperimentExecutable: the part of an experiment (related to the idea of an "executable preservation plan) All phases may read or write into this object, the actual execution takes place on this object. While the Phases correspond to the actual experiment related ideas the executable captures the technical bits. @author Andrew Lindley
eu.scape_project.planning.model.Experiment
An experiment is where all configuration is stored. @author Christoph Becker
fr.irit.halterego.jocular.Experiment
org.apache.airavata.model.workspace.experiment.Experiment
A structure holding the experiment metadata and its child models. userName: The user name of the targeted gateway end user on whose behalf the experiment is being created. the associated gateway identity can only be inferred from the security hand-shake so as to avoid authorized Airavata Clients mimicking an unauthorized request. If a gateway is not registered with Airavata, an authorization exception is thrown. experimentName: The name of the experiment as defined by the user. The name need not be unique as uniqueness is enforced by the generated experiment id. experimentDescription: The verbose description of the experiment. This is an optional parameter.
org.apache.airavata.persistance.registry.jpa.model.Experiment
org.lilian.experiment.Experiment
org.ogce.expbuilder.model.Experiment
@author Suresh Marru @author Raminderjeet Singh
org.patika.mada.dataXML.Experiment
uk.ac.bbsrc.tgac.miso.core.data.Experiment
An Experiment contains design information about a sequencing experiment, as part of a parent {@link Study}. Experiments are associated with {@link Run} objects via {@link Pool} objectswhich contain the actual sequencable material in prepared form. A Pool is attached to an Experiment which is then assigned to an instrument {@link SequencerPoolPartition}. @author Rob Davey @since 0.0.2

weka.experiment.Experiment

Holds all the necessary configuration information for a standard type experiment. This object is able to be serialized for storage on disk. Valid options are:

 -L <num> The lower run number to start the experiment from. (default 1)

 -U <num> The upper run number to end the experiment at (inclusive). (default 10)

 -T <arff file> The dataset to run the experiment on. (required, may be specified multiple times)

 -P <class name> The full class name of a ResultProducer (required). eg: weka.experiment.RandomSplitResultProducer

 -D <class name> The full class name of a ResultListener (required). eg: weka.experiment.CSVResultListener

 -N <string> A string containing any notes about the experiment. (default none)

  Options specific to result producer weka.experiment.RandomSplitResultProducer:

 -P <percent> The percentage of instances to use for training. (default 66)

 -D Save raw split evaluator output.

 -O <file/directory name/path> The filename where raw output will be stored. If a directory name is specified then then individual outputs will be gzipped, otherwise all output will be zipped to the named file. Use in conjuction with -D. (default splitEvalutorOut.zip)

 -W <class name> The full class name of a SplitEvaluator. eg: weka.experiment.ClassifierSplitEvaluator

 -R Set when data is not to be randomized and the data sets' size. Is not to be determined via probabilistic rounding.

  Options specific to split evaluator weka.experiment.ClassifierSplitEvaluator:

 -W <class name> The full class name of the classifier. eg: weka.classifiers.bayes.NaiveBayes

 -C <index> The index of the class for which IR statistics are to be output. (default 1)

 -I <index> The index of an attribute to output in the results. This attribute should identify an instance in order to know which instances are in the test set of a cross validation. if 0 no output (default 0).

 -P Add target and prediction columns to the result for each fold.

  Options specific to classifier weka.classifiers.rules.ZeroR:

 -D If set, classifier is run in debug mode and may output additional info to the console

All options after -- will be passed to the result producer.

@author Len Trigg (trigg@cs.waikato.ac.nz) @version $Revision: 5401 $

Examples of org.apache.airavata.model.workspace.experiment.Experiment

            exOut.add(output);


            Project project = ProjectModelUtil.createProject("default", "admin", "test project");
            String projectId = client.createProject(project);


            Experiment simpleExperiment =
                    ExperimentModelUtil.createSimpleExperiment(projectId, "admin", "echoExperiment", "SimpleEcho3", "SimpleEcho3", exInputs);
            simpleExperiment.setExperimentOutputs(exOut);


            ComputationalResourceScheduling scheduling =
                    ExperimentModelUtil.createComputationResourceScheduling("stampede.tacc.xsede.org", 1, 1, 1, "normal", 0, 0, 1, "TG-STA110014S");
            UserConfigurationData userConfigurationData = new UserConfigurationData();
            userConfigurationData.setAiravataAutoSchedule(false);
            userConfigurationData.setOverrideManualScheduledParams(false);
            userConfigurationData.setComputationalResourceScheduling(scheduling);
            simpleExperiment.setUserConfigurationData(userConfigurationData);
            return client.createExperiment(simpleExperiment);
        } catch (AiravataSystemException e) {
            logger.error("Error occured while creating the experiment...", e.getMessage());
            throw new AiravataSystemException(e);
        } catch (InvalidRequestException e) {

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Examples of org.apache.airavata.model.workspace.experiment.Experiment

            exOut.add(output);


            Project project = ProjectModelUtil.createProject("default", "admin", "test project");
            String projectId = client.createProject(project);


            Experiment simpleExperiment =
                    ExperimentModelUtil.createSimpleExperiment(projectId, "admin", "echoExperiment", "SimpleEcho4", "SimpleEcho4", exInputs);
            simpleExperiment.setExperimentOutputs(exOut);


            ComputationalResourceScheduling scheduling =
                    ExperimentModelUtil.createComputationResourceScheduling("lonestar.tacc.utexas.edu", 1, 1, 1, "normal", 0, 0, 1, "TG-STA110014S");
            scheduling.setResourceHostId("lonestar-host");
            UserConfigurationData userConfigurationData = new UserConfigurationData();
            userConfigurationData.setAiravataAutoSchedule(false);
            userConfigurationData.setOverrideManualScheduledParams(false);
            userConfigurationData.setComputationalResourceScheduling(scheduling);
            simpleExperiment.setUserConfigurationData(userConfigurationData);
            return client.createExperiment(simpleExperiment);
        } catch (AiravataSystemException e) {
            logger.error("Error occured while creating the experiment...", e.getMessage());
            throw new AiravataSystemException(e);
        } catch (InvalidRequestException e) {

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Examples of org.apache.airavata.model.workspace.experiment.Experiment

        exOut.add(output);


        Project project = ProjectModelUtil.createProject("project1", "admin", "test project");
        String projectId = getClient().createProject(project);


        Experiment simpleExperiment = ExperimentModelUtil.createSimpleExperiment(projectId, "admin", "echoExperiment", "SimpleEcho2", "SimpleEcho2", exInputs);
        simpleExperiment.setExperimentOutputs(exOut);


        ComputationalResourceScheduling scheduling = ExperimentModelUtil.createComputationResourceScheduling("trestles.sdsc.edu", 1, 1, 1, "normal", 0, 0, 1, "sds128");
        scheduling.setResourceHostId("gsissh-trestles");
        UserConfigurationData userConfigurationData = new UserConfigurationData();
        userConfigurationData.setAiravataAutoSchedule(false);
        userConfigurationData.setOverrideManualScheduledParams(false);
        userConfigurationData.setComputationalResourceScheduling(scheduling);
        simpleExperiment.setUserConfigurationData(userConfigurationData);
        final String expId = createExperiment(simpleExperiment);
        System.out.println("Experiment Id returned : " + expId);
        log.info("Experiment Id returned : " + expId );
        launchExperiment(expId);
        System.out.println("Launched successfully");

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Examples of org.apache.airavata.model.workspace.experiment.Experiment

        exOut.add(output);


        Project project = ProjectModelUtil.createProject("project1", "admin", "test project");
        String projectId = getClient().createProject(project);


        Experiment simpleExperiment = ExperimentModelUtil.createSimpleExperiment(projectId, "admin", "echoExperiment", "SimpleEcho3", "SimpleEcho3", exInputs);
        simpleExperiment.setExperimentOutputs(exOut);


        ComputationalResourceScheduling scheduling = ExperimentModelUtil.createComputationResourceScheduling("stampede.tacc.xsede.org", 1, 1, 1, "normal", 0, 0, 1, "TG-STA110014S");
        scheduling.setResourceHostId("stampede-host");
        UserConfigurationData userConfigurationData = new UserConfigurationData();
        userConfigurationData.setAiravataAutoSchedule(false);
        userConfigurationData.setOverrideManualScheduledParams(false);
        userConfigurationData.setComputationalResourceScheduling(scheduling);
        simpleExperiment.setUserConfigurationData(userConfigurationData);
        final String expId = createExperiment(simpleExperiment);
        System.out.println("Experiment Id returned : " + expId);
        log.info("Experiment Id returned : " + expId );
        launchExperiment(expId);
        System.out.println("Launched successfully");

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Examples of org.apache.airavata.model.workspace.experiment.Experiment

     * @param experimentId
     * @return
     * @throws OrchestratorException
     */
    public List<TaskDetails> createTasks(String experimentId) throws OrchestratorException {
        Experiment experiment = null;
        List<TaskDetails> tasks = new ArrayList<TaskDetails>();
        try {
            Registry newRegistry = orchestratorContext.getNewRegistry();
            experiment = (Experiment) newRegistry.get(RegistryModelType.EXPERIMENT, experimentId);

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Examples of org.apache.airavata.persistance.registry.jpa.model.Experiment

            EntityManager em = ResourceUtils.getEntityManager();
            em.getTransaction().begin();
          QueryGenerator generator = new QueryGenerator(EXPERIMENT);
          generator.setParameter(ExperimentConstants.EXPERIMENT_ID, name);
          Query q = generator.selectQuery(em);
            Experiment experiment = (Experiment) q.getSingleResult();
            ExperimentResource experimentResource = (ExperimentResource)
                    Utils.getResource(ResourceType.EXPERIMENT, experiment);
            em.getTransaction().commit();
            em.close();
            return experimentResource;

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Examples of org.apache.airavata.persistance.registry.jpa.model.Experiment

          generator.setParameter(ExperimentConstants.PROJECT_NAME, name);
          Query q = generator.selectQuery(em);
            List<?> results = q.getResultList();
            if (results.size() != 0) {
                for (Object result : results) {
                    Experiment experiment = (Experiment) result;
                    ExperimentResource experimentResource = (ExperimentResource)
                            Utils.getResource(ResourceType.EXPERIMENT, experiment);
                    resourceList.add(experimentResource);
                }
            }

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Examples of org.apache.airavata.persistance.registry.jpa.model.Experiment

        EntityManager em = ResourceUtils.getEntityManager();
        em.getTransaction().begin();
        QueryGenerator queryGenerator = new QueryGenerator(EXPERIMENT);
        queryGenerator.setParameter(ExperimentConstants.EXPERIMENT_ID, keys[0]);
        Query q = queryGenerator.selectQuery(em);
        Experiment experiment = (Experiment)q.getSingleResult();
        ExperimentResource experimentResource =
                (ExperimentResource)Utils.getResource(ResourceType.EXPERIMENT, experiment);
        em.getTransaction().commit();
        em.close();
        list.add(experimentResource);

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Examples of org.apache.airavata.persistance.registry.jpa.model.Experiment

    /**
     * save experiment
     */
    public void save() {
        EntityManager em = ResourceUtils.getEntityManager();
        Experiment existingExp = em.find(Experiment.class, expID);
        em.close();


        em = ResourceUtils.getEntityManager();
        em.getTransaction().begin();
        Experiment experiment = new Experiment();
        Project projectmodel = em.find(Project.class, project.getName());
        experiment.setProject(projectmodel);
        Users user = em.find(Users.class, getWorker().getUser());
        Gateway gateway = em.find(Gateway.class, getGateway().getGatewayName());
        experiment.setProject(projectmodel);
        experiment.setExperiment_ID(getExpID());
        experiment.setUser(user);
        experiment.setGateway(gateway);
        experiment.setSubmitted_date(submittedDate);
        if(existingExp != null){
            existingExp.setGateway(gateway);
            existingExp.setProject(projectmodel);
            existingExp.setUser(user);
            existingExp.setSubmitted_date(submittedDate);

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Examples of org.apache.airavata.persistance.registry.jpa.model.Experiment

          QueryGenerator generator = new QueryGenerator(EXPERIMENT);
//          generator.setParameter(ExperimentConstants.PROJECT_NAME, name);
//          generator.setParameter(ExperimentConstants.USERNAME, getWorker().getUser());
          generator.setParameter(ExperimentConstants.EXPERIMENT_ID, name);
          Query q = generator.selectQuery(em);
            Experiment experiment = (Experiment) q.getSingleResult();
            ExperimentResource experimentResource = (ExperimentResource)
                    Utils.getResource(ResourceType.EXPERIMENT, experiment);
            em.getTransaction().commit();
            em.close();
            return experimentResource;

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