pad.setParamByName("settings", settings);
StringBuffer runDescription = new StringBuffer();
if (action instanceof IMigrationAction) {
DigitalObject migrationResultObject;
DigitalObject experimentResultObject;
MigrationResult migrationResult = null;
IMigrationAction migrationAction = (IMigrationAction) action;
// int nextIndex = experimentStatus.getNextSampleIndex();
SampleObject record = experimentStatus.getNextSample(); //null;
// if (nextIndex >= 0 && nextIndex < selectedPlan.getSampleRecordsDefinition().getRecords().size()) {
// record = selectedPlan.getSampleRecordsDefinition().getRecords().get(nextIndex);
// }
//experimentStatus.getNextSample();
while (record != null) {
if (record.isDataExistent()) {
// objectTomigrate is only being read, needs to be merged to lazily get the data out
SampleObject objectToMigrate = em.merge(record);
try {
// ACTION HAPPENS HERE:
migrationResult = migrationAction.migrate(pad, objectToMigrate);
} catch (NullPointerException npe) {
log.error("Caught nullpointer exception when running a migration tool. ### WRONG CONFIGURATION? ###",npe);
} catch (Throwable t) {
log.error("Caught unchecked exception when running a migration tool: "+t.getMessage(),t);
//throw new PlatoServiceException("Could not run service "+a.getName()+" on object "+record.getShortName(),t);
}
if (migrationResult != null) {
if (migrationResult.isSuccessful() && migrationResult.getMigratedObject() != null) {
experimentResultObject = a.getExperiment().getResults().get(record);
migrationResultObject = migrationResult.getMigratedObject();
experimentResultObject.setContentType(migrationResultObject.getContentType());
experimentResultObject.getFormatInfo().assignValues(migrationResultObject.getFormatInfo());
int size = saveTempFile(experimentResultObject,migrationResultObject);
experimentResultObject.getData().setSize(size);
experimentResultObject.setFullname(migrationResultObject.getFullname());
characterise(experimentResultObject);
characteriseFits(experimentResultObject);
experimentResultObject.setJhoveXMLString(jHoveAdaptor.describe(tempFiles.get(experimentResultObject)));
}
// set detailed infos depending on migration result
extractDetailedInfos(a.getExperiment(), record, migrationResult);