Package edu.pitt.dbmi.nlp.noble.ontology

Examples of edu.pitt.dbmi.nlp.noble.ontology.LogicExpression

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   * @param obj if Array or Collection, fill multiple params
   * @return
   */
  public ILogicExpression createLogicExpression(int type, Object param){
    if(param instanceof Collection)
      return new LogicExpression(type,(Collection) param);
    else if(param instanceof Object [])
      return new LogicExpression(type,(Object []) param);
    else
      return new LogicExpression(type,param);
  }
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   * @param type
   * @param obj if Array or Collection, fill multiple params
   * @return
   */
  public ILogicExpression createLogicExpression(){
    return new LogicExpression(ILogicExpression.EMPTY);
  }
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   * usually this is an empty expression with this as its parameter
   * if resource is LogicClass, then it might do something interesting
   * @return
   */
  public ILogicExpression getLogicExpression(){
    return new LogicExpression(this);
  }
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      int  r = ((OWLCardinalityBase) rest).getCardinality();
      obj = new Integer(r);
    }
    if(obj instanceof ILogicExpression)
      return (ILogicExpression) obj;
    return new LogicExpression(obj);
  }
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  /**
   * get necessary restrictions
   */
  public ILogicExpression getNecessaryRestrictions() {
    ILogicExpression exp = new LogicExpression(ILogicExpression.AND);
    for(Object o: getDirectNecessaryRestrictions())
      exp.add(o);
    for(IClass parent: getSuperClasses()){
      for(Object o: parent.getDirectNecessaryRestrictions())
        exp.add(o);
    }
    return exp;
  }
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   * @param dpatterns
   * @return
   */
  public static ILogicExpression getMatchingPatterns(IClass dx, IInstance inst){
    // check for multi-pattern
    ILogicExpression result = new LogicExpression(ILogicExpression.OR);
    ILogicExpression exp = dx.getEquivalentRestrictions();
    if(exp.getExpressionType() == ILogicExpression.OR){
      for(int i=0;i<exp.size();i++){
        if(exp.get(i) instanceof ILogicExpression){
          ILogicExpression e = (ILogicExpression) exp.get(i);
          // if this pattern matches
          if(e.evaluate(inst)){
            result.add(exp.get(i));
          }
        }
      }
    }
    return result;
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  public IClass[] getEquivalentClasses() {
    return getClassList(EQUIVALENT_CLASS).toArray(new IClass [0]);
  }

  public ILogicExpression getEquivalentRestrictions() {
    return new LogicExpression(ILogicExpression.EMPTY);
  }
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    // TODO Auto-generated method stub
    return new IInstance [0];
  }

  public ILogicExpression getNecessaryRestrictions() {
    return new LogicExpression(ILogicExpression.EMPTY);
  }
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Related Classes of edu.pitt.dbmi.nlp.noble.ontology.LogicExpression

  • edu.pitt.dbmi.nlp.noble.extract.model.util.SlideTutorOntologyHelper
  • edu.pitt.dbmi.nlp.noble.ontology.bioportal.BClass
  • edu.pitt.dbmi.nlp.noble.ontology.bioportal.BOntology
  • edu.pitt.dbmi.nlp.noble.ontology.bioportal.BResource
  • edu.pitt.dbmi.nlp.noble.ontology.owl.OClass
  • edu.pitt.dbmi.nlp.noble.ontology.owl.OOntology
  • edu.pitt.dbmi.nlp.noble.ontology.owl.OResource
  • edu.pitt.dbmi.nlp.noble.ontology.protege.PClass
  • edu.pitt.dbmi.nlp.noble.ontology.protege.POntology
  • edu.pitt.dbmi.nlp.noble.ontology.protege.PResource
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