Examples of DiWordwiseBackground

Examples of ru.autosome.commons.backgroundModel.di.DiWordwiseBackground

57
58
59
60
61
62
63
  protected void extract_background(String str) {
    background = DiBackground.fromString(str);
  }
  @Override
  protected void initialize_default_background() {
    background = new DiWordwiseBackground();
  }
View Full Code Here

Examples of ru.autosome.commons.backgroundModel.di.DiWordwiseBackground

22
23
24
25
26
27
28
  public PCM2PWM() {
    super();
  }

  protected DiBackgroundModel defaultBackground() {
    return new DiWordwiseBackground();
  }
View Full Code Here

Examples of ru.autosome.commons.backgroundModel.di.DiWordwiseBackground

71
72
73
74
75
76
77
    fromMononucleotide = false;
  }

  @Override
  protected void initialize_default_background() {
    background = new DiWordwiseBackground();
  }
View Full Code Here

Examples of ru.autosome.commons.backgroundModel.di.DiWordwiseBackground

44
45
46
47
48
49
50
51
    secondPWMFromMononucleotide = false;
  }

  @Override
  protected void initialize_default_background() {
    firstBackground = new DiWordwiseBackground();
    secondBackground = new DiWordwiseBackground();
  }
View Full Code Here

Examples of ru.autosome.commons.backgroundModel.di.DiWordwiseBackground

33
34
35
36
37
38
39
40
41
42
43
      //System.out.println("\n----------\n" + new PairAligned(firstPWMCounting, secondPWMCounting, similarityInfo.alignment).firstModelAligned);
      //System.out.println("\n----------\n" + new PairAligned(firstPWMCounting, secondPWMCounting, similarityInfo.alignment).secondModelAligned);

      DiPWM firstDiPWM = DiPWM.fromPWM(firstPWM);
      DiPWM secondDiPWM = DiPWM.fromPWM(secondPWM);
      DiBackgroundModel dibackground = new DiWordwiseBackground();
//      DiBackgroundModel dibackground = new DiBackground(new double[]{ 0.0625,0.0625,0.0625,0.0625,
//                                                                      0.0625,0.0625,0.0625,0.0625,
//                                                                      0.0625,0.0625,0.0625,0.0625,
//                                                                      0.0625,0.0625,0.0625,0.0625});
      ru.autosome.macroape.calculation.di.CompareModels dicomparator;
View Full Code Here

Examples of ru.autosome.commons.backgroundModel.di.DiWordwiseBackground

61
62
63
64
65
66
67
68
    return DiBackground.fromString(str);
  }

  @Override
  protected void initialize_default_background() {
    queryBackground = new DiWordwiseBackground();
    collectionBackground = new DiWordwiseBackground();
  }
View Full Code Here

Examples of ru.autosome.commons.backgroundModel.di.DiWordwiseBackground

53
54
55
56
57
58
59
    fromMononucleotide = false;
  }

  @Override
  protected void initialize_default_background() {
    background = new DiWordwiseBackground();
  }
View Full Code Here

Examples of ru.autosome.commons.backgroundModel.di.DiWordwiseBackground

42
43
44
45
46
47
48
    fromMononucleotide = false;
  }

  @Override
  protected void initialize_default_background() {
    background = new DiWordwiseBackground();
  }
View Full Code Here

Examples of ru.autosome.commons.backgroundModel.di.DiWordwiseBackground

28
29
30
31
32
33
34
    fromMononucleotide = false;
  }

  @Override
  protected void initialize_default_background() {
    background = new DiWordwiseBackground();
  }
View Full Code Here

Examples of ru.autosome.commons.backgroundModel.di.DiWordwiseBackground

64
65
66
67
68
69
70
    return score(word.sequence, background);
  }

  @Override
  public double score(Sequence word) throws IllegalArgumentException {
    return score(word, new DiWordwiseBackground());
  }
View Full Code Here
TOP
Copyright © 2018 www.massapi.com. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.