Examples of CueListScanner

Examples of org.mitre.medfacts.i2b2.scanners.CueListScanner

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       URI negationCueFileUri = negationCueFileUrl.toURI();
       System.out.format("negation cue list uri: %s%n", negationCueFileUri);
       File negationCueFile = new File(negationCueFileUri);
       System.out.format("negation cue list url: %s%n", negationCueFile);

       CueListScanner scanner = new CueListScanner(negationCueFile, CueWordType.NEGATION);
       scanner.setTextLookup(textLookup);
       scanner.execute();
       List<Annotation> annotationList = scanner.getAnnotationList();
       System.out.println("ANNOTATIONS:");
       if (annotationList == null)
       {
         System.out.println("no annotations returned.");
       } else
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Examples of org.mitre.medfacts.i2b2.scanners.CueListScanner

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       URI negationCueFileUri = negationCueFileUrl.toURI();
       System.out.format("negation cue list uri: %s%n", negationCueFileUri);
       File negationCueFile = new File(negationCueFileUri);
       System.out.format("negation cue list url: %s%n", negationCueFile);

       CueListScanner scanner = new CueListScanner(negationCueFile, CueWordType.SPECULATION);
       scanner.setTextLookup(textLookup);
       scanner.execute();
       List<Annotation> annotationList = scanner.getAnnotationList();
       System.out.println("ANNOTATIONS:");
       if (annotationList == null)
       {
         System.out.println("no annotations returned.");
       } else
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Examples of org.mitre.medfacts.i2b2.scanners.CueListScanner

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      logger.fine(String.format("inside processCueList working with cue file: %s", cueListFilename));
      InputStream cueFileInputStream = classLoader.getResourceAsStream(cueListFilename);
      InputStreamReader inputStreamReader = new InputStreamReader(cueFileInputStream);
      BufferedReader bufferedReader = new BufferedReader(inputStreamReader);

      CueListScanner scanner = new CueListScanner(bufferedReader, cueWordType);
      scanner.setTextLookup(textLookup);
      scanner.execute();
      annotationList = scanner.getAnnotationList();

      bufferedReader.close();
      inputStreamReader.close();
      cueFileInputStream.close();
    } catch (IOException ex)
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