Examples of CanFindPvalue

Examples of ru.autosome.ape.calculation.findPvalue.CanFindPvalue

36
37
38
39
40
41
42
43
44
45
46
    Map<PWM, Map<SequenceWithSNP, SNPScan.RegionAffinityInfos>> result;
    setStatus(Status.RUNNING);
    try {
      result = new HashMap<PWM, Map<SequenceWithSNP, SNPScan.RegionAffinityInfos>>();
      for (PWM pwm: parameters.pvalueCalculator.keySet()) {
        CanFindPvalue pvalueCalculator = parameters.pvalueCalculator.get(pwm);

        Map<SequenceWithSNP,SNPScan.RegionAffinityInfos> result_part = new HashMap<SequenceWithSNP, SNPScan.RegionAffinityInfos>();

        for (SequenceWithSNP sequenceWithSNP: parameters.sequencesWithSNP) {
          if (interrupted()) {
View Full Code Here

Examples of ru.autosome.ape.calculation.findPvalue.CanFindPvalue

42
43
44
45
46
47
48
49
50
51
52
  protected void load_collection_of_pwms_with_evaluators() {
    List<MotifType> motifList = load_collection_of_pwms();

    pwmCollection = new ArrayList<ThresholdEvaluator>();
    for (MotifType motif: motifList) {
      CanFindPvalue pvalueCalculator;
      if (thresholds_folder == null) {
        pvalueCalculator = new FindPvalueAPE<MotifType, BackgroundType>(motif, background, discretizer, max_hash_size);
      } else {
        pvalueCalculator = new FindPvalueBsearchBuilder(thresholds_folder).pvalueCalculator(motif);
      }
View Full Code Here
TOP
Copyright © 2018 www.massapi.com. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.