String qPath = Parameter.temp_path + Parameter.temp_output_sequence_query;
String sPath = Parameter.temp_path + Parameter.temp_output_sequence_subject;
String oPath = Parameter.temp_path + Parameter.temp_output_blast;
document.getQueryGenome().toFasta(qPath);
document.getSubjectGenome().toFasta(sPath);
new Thread(new BlastExecutor( qPath, sPath, oPath,
dialog.getMatrix(), dialog.getThresholds(), dialog.hasFilters(),
document)).start();
}
}