Examples of AtomImpl

Examples of org.biojava.bio.structure.AtomImpl

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    ProjectedAtomIterator(Structure structure) {
      // logger.info("new ProjectedAtomIterator");
      iter = new org.biojava.bio.structure.AtomIterator(structure);
      pos = 0;
      atom = new AtomImpl();
      this.structure = structure;

    }
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Examples of org.biojava.bio.structure.AtomImpl

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  /**
   * initalizes the display
   */
  private void initJmolDisplay() {
    Atom a = new AtomImpl();
    a.setName("CA");
    a.setFullName(" CA ");
    a.setCoords(new double[] { 47.866, 28.415, 2.952 });

    Group g = new AminoAcidImpl();
    g.setPDBCode("9");
    try {
      g.setPDBName("GLY");
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