* @return the default filters for setting a match as doubtful
*/
public static ArrayList<AssumptionFilter> getDefaultAssumptionFilters() {
ArrayList<AssumptionFilter> filters = new ArrayList<AssumptionFilter>();
AssumptionFilter psmFilter = new AssumptionFilter(">30% Fragment Ion Sequence Coverage");
psmFilter.setDescription(">30% sequence coverage by fragment ions");
psmFilter.setSequenceCoverage(30.0);
psmFilter.setSequenceCoverageComparison(RowFilter.ComparisonType.AFTER);
filters.add(psmFilter);
return filters;
}