Examples of ArtificialGATKSAMFileWriter

org.broadinstitute.gatk.utils.sam.ArtificialGATKSAMFileWriter
@author aaron
Class ArtificialGATKSAMFileWriter
generates a fake samwriter, that you can get the output reads from when you're done.

Examples of org.broadinstitute.gatk.utils.sam.ArtificialGATKSAMFileWriter

    public void before() {
        trav = new ArtificialReadsTraversal();
        readTotal = ( ( trav.endingChr - trav.startingChr ) + 1 ) * trav.readsPerChr + trav.unMappedReads;


        walker = new org.broadinstitute.gatk.tools.walkers.readutils.PrintReads();
        writer = new ArtificialGATKSAMFileWriter();
        walker.initialize();
    }

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