Examples of ArrayModifiableDBIDs


Examples of de.lmu.ifi.dbs.elki.database.ids.ArrayModifiableDBIDs

    final int dimy = DatabaseUtil.dimensionality(relationy);
    assert (dim == 2);
    KNNQuery<V, D> knnQuery = QueryUtil.getKNNQuery(relationx, getDistanceFunction(), k + 1);

    // We need stable indexed DBIDs
    ArrayModifiableDBIDs ids = DBIDUtil.newArray(relationx.getDBIDs());
    // Sort, so we can do a binary search below.
    ids.sort();

    // init F,X,Z
    Matrix X = new Matrix(ids.size(), 6);
    Matrix F = new Matrix(ids.size(), ids.size());
    Matrix Y = new Matrix(ids.size(), dimy);
    for(int i = 0; i < ids.size(); i++) {
      DBID id = ids.get(i);

      // Fill the data matrix
      {
        V vec = relationx.get(id);
        double la = vec.doubleValue(1);
        double lo = vec.doubleValue(2);
        X.set(i, 0, 1.0);
        X.set(i, 1, la);
        X.set(i, 2, lo);
        X.set(i, 3, la * lo);
        X.set(i, 4, la * la);
        X.set(i, 5, lo * lo);
      }

      {
        for(int d = 0; d < dimy; d++) {
          double idy = relationy.get(id).doubleValue(d + 1);
          Y.set(i, d, idy);
        }
      }

      // Fill the neighborhood matrix F:
      {
        KNNResult<D> neighbors = knnQuery.getKNNForDBID(id, k + 1);
        ModifiableDBIDs neighborhood = DBIDUtil.newArray(neighbors.size());
        for(DistanceResultPair<D> dpair : neighbors) {
          if(id.equals(dpair.getDBID())) {
            continue;
          }
          neighborhood.add(dpair.getDBID());
        }
        // Weight object itself positively.
        F.set(i, i, 1.0);
        final int nweight = -1 / neighborhood.size();
        // We need to find the index positions of the neighbors, unfortunately.
        for(DBID nid : neighborhood) {
          int pos = ids.binarySearch(nid);
          assert (pos >= 0);
          F.set(pos, i, nweight);
        }
      }
    }
    // Estimate the parameter beta
    // Common term that we can save recomputing.
    Matrix common = X.transposeTimesTranspose(F).times(F);
    Matrix b = common.times(X).inverse().times(common.times(Y));
    // Estimate sigma_0 and sigma:
    // sigma_sum_square = sigma_0*sigma_0 + sigma*sigma
    Matrix sigmaMat = F.times(X.times(b).minus(F.times(Y)));
    final double sigma_sum_square = sigmaMat.normF() / (relationx.size() - 6 - 1);
    final double norm = 1 / Math.sqrt(sigma_sum_square);

    // calculate the absolute values of standard residuals
    Matrix E = F.times(Y.minus(X.times(b))).timesEquals(norm);

    DBID worstid = null;
    double worstscore = Double.NEGATIVE_INFINITY;
    for(int i = 0; i < ids.size(); i++) {
      DBID id = ids.get(i);
      double err = E.getRow(i).euclideanLength();
      // double err = Math.abs(E.get(i, 0));
      if(err > worstscore) {
        worstscore = err;
        worstid = id;
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