Examples of ArgumentSource

Examples of org.broadinstitute.gatk.utils.commandline.ArgumentSource

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     */
    public abstract <T> T getStorage( Stub<T> stub );

    public void prepareWalker( Walker walker, ValidationStringency strictnessLevel ) {
        for( Map.Entry<ArgumentSource,Object> io: inputs.entrySet() ) {
            ArgumentSource targetField = io.getKey();
            Object targetValue = io.getValue();

            // Ghastly hack: reaches in and finishes building out the SAMFileReader.
            // TODO: Generalize this, and move it to its own initialization step.
            if( targetValue instanceof SAMFileReaderBuilder) {
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