Examples of AiravataAPI

Examples of org.apache.airavata.client.api.AiravataAPI

112
113
114
115
116
117
118
119
120
121
122
          }

                    String userName = ServerSettings.getSystemUser();
                    String gateway = ServerSettings.getSystemUserGateway();

                    AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(gateway, userName);
          String localAddress = ServiceUtils.generateServiceURLFromConfigurationContext(context, MESSAGE_BOX_SERVICE_NAME);
          logger.debug("MESSAGE BOX SERVICE_ADDRESS:" + localAddress);
                    context.setProperty(SERVICE_URL,new URI(localAddress));
          context.setProperty(JCR_REGISTRY,airavataAPI);
          /*
 
View Full Code Here

Examples of org.apache.airavata.client.api.AiravataAPI

51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
        // workflow context
        MessageContext<String> workflowContext = context.getMessageContext(WorkflowContextImpl.WORKFLOW_CONTEXT_NAME);

        // registry
        AiravataAPI airavataAPI = context.getExecutionContext().getRegistryService();

        if (outputContext != null && workflowContext != null) {

            String workflowId = workflowContext.getValue(WorkflowContextImpl.WORKFLOW_ID);
            List<ActualParameter> outputs = new ArrayList<ActualParameter>();

            for (Iterator<String> iterator = outputContext.getNames(); iterator.hasNext();) {
                String key = iterator.next();
                outputs.add(outputContext.getValue(key));
            }

            if (airavataAPI != null && DataRegistry.class.isAssignableFrom(airavataAPI.getClass())) {
                try {
          ((DataRegistry) airavataAPI).saveOutput(workflowId, outputs);
        } catch (RegistryException e) {
          log.error(e.getLocalizedMessage(), e);
        }
            } else {
                log.debug("Registry does not support for Data Catalog, CLass: " + airavataAPI.getClass());
            }

        } else {
            log.debug("Context is null");
        }
View Full Code Here

Examples of org.apache.airavata.client.api.AiravataAPI

110
111
112
113
114
115
116
117
118
119
120
        public void run() {
                String port = null;
                String username = null;
                String password = null;
                String gatewayName = null;
                AiravataAPI airavataAPI = null;
                try {
                    try {
                        Thread.sleep(JCR_AVAIALABILITY_WAIT_INTERVAL);
                    } catch (InterruptedException e1) {
                        e1.printStackTrace();
View Full Code Here

Examples of org.apache.airavata.client.api.AiravataAPI

149
150
151
152
153
154
155
156
157
158
159
160
161
162
    }

    public void shutDown(ConfigurationContext configctx, AxisService service) {
        //following nullchecks will avoid the exceptions when user press Ctrl-C before the server start properly
        if (configctx.getProperty(GFAC_CONFIGURATION) != null) {
            AiravataAPI airavataAPI = ((GFacConfiguration) configctx.getProperty(GFAC_CONFIGURATION)).getAiravataAPI();
            String gfacURL = (String) configctx.getProperty(GFAC_URL);
            try {
                airavataAPI.getAiravataManager().removeGFacURI(new URI(gfacURL));
            } catch (AiravataAPIInvocationException e) {
                e.printStackTrace();
            } catch (URISyntaxException e) {
                e.printStackTrace();
            }
View Full Code Here

Examples of org.apache.airavata.client.api.AiravataAPI

158
159
160
161
162
163
164
165
166
167
168
            this.workflowInterpreterTextField.setText(workflowInterpreterURL.toString());
        } else {
            this.workflowInterpreterTextField.setText(XBayaConstants.DEFAULT_WORKFLOW_INTERPRETER_URL);
        }

        AiravataAPI airavataAPI = config.getAiravataAPI();
        if (null != airavataAPI) {
            this.RegistryTextField.setText(config.getRegistryURL());
        } else {
            this.RegistryTextField.setText(XBayaConstants.REGISTRY_URL.toASCIIString());
        }
View Full Code Here

Examples of org.apache.airavata.client.api.AiravataAPI

314
315
316
317
318
319
320
321
322
323
324
325
326
327
                    List<WorkflowInput> workflowInputs=new ArrayList<WorkflowInput>();
                    for (int i = 0; i < inputNodes.size(); i++) {
                      InputNode inputNode = inputNodes.get(i);
                      workflowInputs.add(new WorkflowInput(inputNode.getID(), inputNode.getDefaultValue().toString()));
                    }
                    AiravataAPI api = engine.getConfiguration().getAiravataAPI();
                   
                    ExperimentAdvanceOptions options = api.getExecutionManager().createExperimentAdvanceOptions(instanceNameFinal, api.getCurrentUser(), null);
                    String experimentId = api.getExecutionManager().runExperiment(api.getWorkflowManager().getWorkflowAsString(workflow), workflowInputs,options);
                    try {
                        WorkflowInterpreterLaunchWindow.this.engine.getMonitor().getConfiguration().setTopic(experimentId);
                        WorkflowInterpreterLaunchWindow.this.engine.getMonitor().start();
                    } catch (MonitorException e1) {
                        WorkflowInterpreterLaunchWindow.this.engine.getGUI().getErrorWindow().error(e1);
View Full Code Here

Examples of org.apache.airavata.client.api.AiravataAPI

167
168
169
170
171
172
173
174
175
176
177
        registryURL = "http://" + serverUrl + ":" + port + "/" + serverContextName + "/api";

        log("Configurations - Registry URL : " + registryURL);

        PasswordCallback passwordCallback = new PasswordCallbackImpl();
        AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(new URI(getRegistryURL()), getGatewayName(), getUserName(),
                passwordCallback);

        checkServerStartup(airavataAPI);

        log("Server successfully started .............................");
View Full Code Here

Examples of org.apache.airavata.client.api.AiravataAPI

388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
        }
    }

    protected void runWorkFlow(Workflow workflow, List<String> inputValues) throws Exception {

        AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(new URI(getRegistryURL()), getGatewayName(), getUserName(),
                new PasswordCallbackImpl());
        List<WorkflowInput> workflowInputs = setupInputs(workflow, inputValues);
        String workflowName = workflow.getName();
        ExperimentAdvanceOptions options = airavataAPI.getExecutionManager().createExperimentAdvanceOptions(
                workflowName, getUserName(), null);
        String experimentId = airavataAPI.getExecutionManager().runExperiment(workflowName, workflowInputs, options);

        Assert.assertNotNull(experimentId);

        log.info("Run workflow completed ....");
        log.info("Starting monitoring ....");
View Full Code Here

Examples of org.apache.airavata.client.api.AiravataAPI

406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
        monitor(experimentId);
    }

    protected void runWorkFlowWithoutMonitor(Workflow workflow, List<String> inputValues) throws Exception {

        AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(new URI(getRegistryURL()), getGatewayName(), getUserName(),
                new PasswordCallbackImpl());
        List<WorkflowInput> workflowInputs = setupInputs(workflow, inputValues);
        String workflowName = workflow.getName();
        ExperimentAdvanceOptions options = airavataAPI.getExecutionManager().createExperimentAdvanceOptions(
                workflowName, getUserName(), null);
        String experimentId = airavataAPI.getExecutionManager().runExperiment(workflowName, workflowInputs, options,
                new EventDataListenerAdapter() {
                    @Override
                    public void notify(EventDataRepository eventDataRepo, EventData eventData) {
                        // do nothing
                    }
                });

        Assert.assertNotNull(experimentId);
        airavataAPI.getExecutionManager().waitForExperimentTermination(experimentId);

        log.info("Run workflow completed ....");
        log.info("Starting monitoring ....");

        verifyOutput(experimentId, "echo_output=Airavata_Test");
View Full Code Here

Examples of org.apache.airavata.client.api.AiravataAPI

430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
        verifyOutput(experimentId, "echo_output=Airavata_Test");
    }

    protected void verifyOutput(String experimentId, String outputVerifyingString) throws Exception {
        AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(new URI(getRegistryURL()), getGatewayName(), getUserName(),
                new PasswordCallbackImpl());
        log.info("Experiment ID Returned : " + experimentId);

        ExperimentData experimentData = airavataAPI.getProvenanceManager().getExperimentData(experimentId);

        log.info("Verifying output ...");

        List<WorkflowExecutionDataImpl> workflowInstanceData = experimentData.getWorkflowExecutionDataList();
View Full Code Here
TOP
Copyright © 2018 www.massapi.com. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.