package ca.uhn.fhir.model.dstu.resource;
import java.util.Date;
import java.util.List;
import ca.uhn.fhir.model.api.BaseElement;
import ca.uhn.fhir.model.api.BaseResource;
import ca.uhn.fhir.model.api.IElement;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.api.IResourceBlock;
import ca.uhn.fhir.model.api.TemporalPrecisionEnum;
import ca.uhn.fhir.model.api.annotation.Block;
import ca.uhn.fhir.model.api.annotation.Child;
import ca.uhn.fhir.model.api.annotation.Description;
import ca.uhn.fhir.model.api.annotation.ResourceDef;
import ca.uhn.fhir.model.dstu.composite.AttachmentDt;
import ca.uhn.fhir.model.dstu.composite.CodeableConceptDt;
import ca.uhn.fhir.model.dstu.composite.ResourceReferenceDt;
import ca.uhn.fhir.model.primitive.CodeDt;
import ca.uhn.fhir.model.primitive.DateDt;
import ca.uhn.fhir.model.primitive.StringDt;
/**
* HAPI/FHIR <b>SequencingLab</b> Resource
* (Sequencing Lab)
*
* <p>
* <b>Definition:</b>
* A lab for sequencing
* </p>
*
* <p>
* <b>Requirements:</b>
*
* </p>
*
* <p>
* <b>Profile Definition:</b>
* <a href="http://hl7.org/fhir/profiles/SequencingLab">http://hl7.org/fhir/profiles/SequencingLab</a>
* </p>
*
*/
@ResourceDef(name="SequencingLab", profile="http://hl7.org/fhir/profiles/SequencingLab", id="sequencinglab")
public class SequencingLab extends BaseResource implements IResource {
/**
* Search parameter constant for <b>subject</b>
* <p>
* Description: <b>Subject of the lab</b><br/>
* Type: <b>reference</b><br/>
* Path: <b>SequencingLab.subject</b><br/>
* </p>
*/
public static final String SP_SUBJECT = "subject";
/**
* Search parameter constant for <b>specimen</b>
* <p>
* Description: <b>Type of the specimen used for the lab</b><br/>
* Type: <b>string</b><br/>
* Path: <b>SequencingLab.specimen.type</b><br/>
* </p>
*/
public static final String SP_SPECIMEN = "specimen";
/**
* Search parameter constant for <b>date</b>
* <p>
* Description: <b>Date when result of the lab is uploaded</b><br/>
* Type: <b>date</b><br/>
* Path: <b>SequencingLab.date</b><br/>
* </p>
*/
public static final String SP_DATE = "date";
/**
* Search parameter constant for <b>organization</b>
* <p>
* Description: <b>Organization that does the lab</b><br/>
* Type: <b>string</b><br/>
* Path: <b>SequencingLab.organization</b><br/>
* </p>
*/
public static final String SP_ORGANIZATION = "organization";
/**
* Search parameter constant for <b>system-class</b>
* <p>
* Description: <b>Class of the sequencing system</b><br/>
* Type: <b>string</b><br/>
* Path: <b>SequencingLab.system.class</b><br/>
* </p>
*/
public static final String SP_SYSTEM_CLASS = "system-class";
/**
* Search parameter constant for <b>system-name</b>
* <p>
* Description: <b>Name of the sequencing system</b><br/>
* Type: <b>string</b><br/>
* Path: <b>SequencingLab.system.name</b><br/>
* </p>
*/
public static final String SP_SYSTEM_NAME = "system-name";
@Child(name="subject", order=0, min=0, max=1, type={
ca.uhn.fhir.model.dstu.resource.Patient.class })
@Description(
shortDefinition="Subject",
formalDefinition="Subject of the sequencing lab"
)
private ResourceReferenceDt mySubject;
@Child(name="organization", type=StringDt.class, order=1, min=0, max=1)
@Description(
shortDefinition="Organization",
formalDefinition="Organization that does the sequencing"
)
private StringDt myOrganization;
@Child(name="name", type=StringDt.class, order=2, min=1, max=1)
@Description(
shortDefinition="Name",
formalDefinition="Name of the lab"
)
private StringDt myName;
@Child(name="date", type=DateDt.class, order=3, min=1, max=1)
@Description(
shortDefinition="Date",
formalDefinition="Date when the result of the lab is uploaded"
)
private DateDt myDate;
@Child(name="type", type=CodeDt.class, order=4, min=1, max=1)
@Description(
shortDefinition="Type",
formalDefinition="Type of the sequencing lab"
)
private CodeDt myType;
@Child(name="system", order=5, min=0, max=1)
@Description(
shortDefinition="Sequencing System",
formalDefinition="System of machine used for sequencing"
)
private System mySystem;
@Child(name="specimen", order=6, min=1, max=1)
@Description(
shortDefinition="Specimen of the lab",
formalDefinition="Specimen of the lab"
)
private Specimen mySpecimen;
@Child(name="file", type=AttachmentDt.class, order=7, min=0, max=Child.MAX_UNLIMITED)
@Description(
shortDefinition="File",
formalDefinition="Files uploaded as results of the lab"
)
private java.util.List<AttachmentDt> myFile;
@Override
public boolean isEmpty() {
return super.isBaseEmpty() && ca.uhn.fhir.util.ElementUtil.isEmpty( mySubject, myOrganization, myName, myDate, myType, mySystem, mySpecimen, myFile);
}
@Override
public java.util.List<IElement> getAllPopulatedChildElements() {
return getAllPopulatedChildElementsOfType(null);
}
@Override
public <T extends IElement> List<T> getAllPopulatedChildElementsOfType(Class<T> theType) {
return ca.uhn.fhir.util.ElementUtil.allPopulatedChildElements(theType, mySubject, myOrganization, myName, myDate, myType, mySystem, mySpecimen, myFile);
}
/**
* Gets the value(s) for <b>subject</b> (Subject).
* creating it if it does
* not exist. Will not return <code>null</code>.
*
* <p>
* <b>Definition:</b>
* Subject of the sequencing lab
* </p>
*/
public ResourceReferenceDt getSubject() {
if (mySubject == null) {
mySubject = new ResourceReferenceDt();
}
return mySubject;
}
/**
* Sets the value(s) for <b>subject</b> (Subject)
*
* <p>
* <b>Definition:</b>
* Subject of the sequencing lab
* </p>
*/
public SequencingLab setSubject(ResourceReferenceDt theValue) {
mySubject = theValue;
return this;
}
/**
* Gets the value(s) for <b>organization</b> (Organization).
* creating it if it does
* not exist. Will not return <code>null</code>.
*
* <p>
* <b>Definition:</b>
* Organization that does the sequencing
* </p>
*/
public StringDt getOrganization() {
if (myOrganization == null) {
myOrganization = new StringDt();
}
return myOrganization;
}
/**
* Sets the value(s) for <b>organization</b> (Organization)
*
* <p>
* <b>Definition:</b>
* Organization that does the sequencing
* </p>
*/
public SequencingLab setOrganization(StringDt theValue) {
myOrganization = theValue;
return this;
}
/**
* Sets the value for <b>organization</b> (Organization)
*
* <p>
* <b>Definition:</b>
* Organization that does the sequencing
* </p>
*/
public SequencingLab setOrganization( String theString) {
myOrganization = new StringDt(theString);
return this;
}
/**
* Gets the value(s) for <b>name</b> (Name).
* creating it if it does
* not exist. Will not return <code>null</code>.
*
* <p>
* <b>Definition:</b>
* Name of the lab
* </p>
*/
public StringDt getName() {
if (myName == null) {
myName = new StringDt();
}
return myName;
}
/**
* Sets the value(s) for <b>name</b> (Name)
*
* <p>
* <b>Definition:</b>
* Name of the lab
* </p>
*/
public SequencingLab setName(StringDt theValue) {
myName = theValue;
return this;
}
/**
* Sets the value for <b>name</b> (Name)
*
* <p>
* <b>Definition:</b>
* Name of the lab
* </p>
*/
public SequencingLab setName( String theString) {
myName = new StringDt(theString);
return this;
}
/**
* Gets the value(s) for <b>date</b> (Date).
* creating it if it does
* not exist. Will not return <code>null</code>.
*
* <p>
* <b>Definition:</b>
* Date when the result of the lab is uploaded
* </p>
*/
public DateDt getDate() {
if (myDate == null) {
myDate = new DateDt();
}
return myDate;
}
/**
* Sets the value(s) for <b>date</b> (Date)
*
* <p>
* <b>Definition:</b>
* Date when the result of the lab is uploaded
* </p>
*/
public SequencingLab setDate(DateDt theValue) {
myDate = theValue;
return this;
}
/**
* Sets the value for <b>date</b> (Date)
*
* <p>
* <b>Definition:</b>
* Date when the result of the lab is uploaded
* </p>
*/
public SequencingLab setDate( Date theDate, TemporalPrecisionEnum thePrecision) {
myDate = new DateDt(theDate, thePrecision);
return this;
}
/**
* Sets the value for <b>date</b> (Date)
*
* <p>
* <b>Definition:</b>
* Date when the result of the lab is uploaded
* </p>
*/
public SequencingLab setDateWithDayPrecision( Date theDate) {
myDate = new DateDt(theDate);
return this;
}
/**
* Gets the value(s) for <b>type</b> (Type).
* creating it if it does
* not exist. Will not return <code>null</code>.
*
* <p>
* <b>Definition:</b>
* Type of the sequencing lab
* </p>
*/
public CodeDt getType() {
if (myType == null) {
myType = new CodeDt();
}
return myType;
}
/**
* Sets the value(s) for <b>type</b> (Type)
*
* <p>
* <b>Definition:</b>
* Type of the sequencing lab
* </p>
*/
public SequencingLab setType(CodeDt theValue) {
myType = theValue;
return this;
}
/**
* Sets the value for <b>type</b> (Type)
*
* <p>
* <b>Definition:</b>
* Type of the sequencing lab
* </p>
*/
public SequencingLab setType( String theCode) {
myType = new CodeDt(theCode);
return this;
}
/**
* Gets the value(s) for <b>system</b> (Sequencing System).
* creating it if it does
* not exist. Will not return <code>null</code>.
*
* <p>
* <b>Definition:</b>
* System of machine used for sequencing
* </p>
*/
public System getSystem() {
if (mySystem == null) {
mySystem = new System();
}
return mySystem;
}
/**
* Sets the value(s) for <b>system</b> (Sequencing System)
*
* <p>
* <b>Definition:</b>
* System of machine used for sequencing
* </p>
*/
public SequencingLab setSystem(System theValue) {
mySystem = theValue;
return this;
}
/**
* Gets the value(s) for <b>specimen</b> (Specimen of the lab).
* creating it if it does
* not exist. Will not return <code>null</code>.
*
* <p>
* <b>Definition:</b>
* Specimen of the lab
* </p>
*/
public Specimen getSpecimen() {
if (mySpecimen == null) {
mySpecimen = new Specimen();
}
return mySpecimen;
}
/**
* Sets the value(s) for <b>specimen</b> (Specimen of the lab)
*
* <p>
* <b>Definition:</b>
* Specimen of the lab
* </p>
*/
public SequencingLab setSpecimen(Specimen theValue) {
mySpecimen = theValue;
return this;
}
/**
* Gets the value(s) for <b>file</b> (File).
* creating it if it does
* not exist. Will not return <code>null</code>.
*
* <p>
* <b>Definition:</b>
* Files uploaded as results of the lab
* </p>
*/
public java.util.List<AttachmentDt> getFile() {
if (myFile == null) {
myFile = new java.util.ArrayList<AttachmentDt>();
}
return myFile;
}
/**
* Sets the value(s) for <b>file</b> (File)
*
* <p>
* <b>Definition:</b>
* Files uploaded as results of the lab
* </p>
*/
public SequencingLab setFile(java.util.List<AttachmentDt> theValue) {
myFile = theValue;
return this;
}
/**
* Adds and returns a new value for <b>file</b> (File)
*
* <p>
* <b>Definition:</b>
* Files uploaded as results of the lab
* </p>
*/
public AttachmentDt addFile() {
AttachmentDt newType = new AttachmentDt();
getFile().add(newType);
return newType;
}
/**
* Gets the first repetition for <b>file</b> (File),
* creating it if it does not already exist.
*
* <p>
* <b>Definition:</b>
* Files uploaded as results of the lab
* </p>
*/
public AttachmentDt getFileFirstRep() {
if (getFile().isEmpty()) {
return addFile();
}
return getFile().get(0);
}
/**
* Block class for child element: <b>SequencingLab.system</b> (Sequencing System)
*
* <p>
* <b>Definition:</b>
* System of machine used for sequencing
* </p>
*/
@Block(name="SequencingLab.system")
public static class System extends BaseElement implements IResourceBlock {
@Child(name="class", type=CodeDt.class, order=0, min=0, max=1)
@Description(
shortDefinition="Class of sequencing system",
formalDefinition="Class of sequencing system"
)
private CodeDt myClassElement;
@Child(name="version", type=StringDt.class, order=1, min=0, max=1)
@Description(
shortDefinition="Version of sequencing system",
formalDefinition="Version of sequencing system"
)
private StringDt myVersion;
@Child(name="name", type=CodeDt.class, order=2, min=0, max=1)
@Description(
shortDefinition="Name of sequencing system",
formalDefinition="Name of sequencing system"
)
private CodeDt myName;
@Child(name="identity", type=StringDt.class, order=3, min=0, max=1)
@Description(
shortDefinition="Id of sequencing system",
formalDefinition="Id of sequencing system"
)
private StringDt myIdentity;
@Override
public boolean isEmpty() {
return super.isBaseEmpty() && ca.uhn.fhir.util.ElementUtil.isEmpty( myClassElement, myVersion, myName, myIdentity);
}
@Override
public java.util.List<IElement> getAllPopulatedChildElements() {
return getAllPopulatedChildElementsOfType(null);
}
@Override
public <T extends IElement> List<T> getAllPopulatedChildElementsOfType(Class<T> theType) {
return ca.uhn.fhir.util.ElementUtil.allPopulatedChildElements(theType, myClassElement, myVersion, myName, myIdentity);
}
/**
* Gets the value(s) for <b>class</b> (Class of sequencing system).
* creating it if it does
* not exist. Will not return <code>null</code>.
*
* <p>
* <b>Definition:</b>
* Class of sequencing system
* </p>
*/
public CodeDt getClassElement() {
if (myClassElement == null) {
myClassElement = new CodeDt();
}
return myClassElement;
}
/**
* Sets the value(s) for <b>class</b> (Class of sequencing system)
*
* <p>
* <b>Definition:</b>
* Class of sequencing system
* </p>
*/
public System setClassElement(CodeDt theValue) {
myClassElement = theValue;
return this;
}
/**
* Sets the value for <b>class</b> (Class of sequencing system)
*
* <p>
* <b>Definition:</b>
* Class of sequencing system
* </p>
*/
public System setClassElement( String theCode) {
myClassElement = new CodeDt(theCode);
return this;
}
/**
* Gets the value(s) for <b>version</b> (Version of sequencing system).
* creating it if it does
* not exist. Will not return <code>null</code>.
*
* <p>
* <b>Definition:</b>
* Version of sequencing system
* </p>
*/
public StringDt getVersion() {
if (myVersion == null) {
myVersion = new StringDt();
}
return myVersion;
}
/**
* Sets the value(s) for <b>version</b> (Version of sequencing system)
*
* <p>
* <b>Definition:</b>
* Version of sequencing system
* </p>
*/
public System setVersion(StringDt theValue) {
myVersion = theValue;
return this;
}
/**
* Sets the value for <b>version</b> (Version of sequencing system)
*
* <p>
* <b>Definition:</b>
* Version of sequencing system
* </p>
*/
public System setVersion( String theString) {
myVersion = new StringDt(theString);
return this;
}
/**
* Gets the value(s) for <b>name</b> (Name of sequencing system).
* creating it if it does
* not exist. Will not return <code>null</code>.
*
* <p>
* <b>Definition:</b>
* Name of sequencing system
* </p>
*/
public CodeDt getName() {
if (myName == null) {
myName = new CodeDt();
}
return myName;
}
/**
* Sets the value(s) for <b>name</b> (Name of sequencing system)
*
* <p>
* <b>Definition:</b>
* Name of sequencing system
* </p>
*/
public System setName(CodeDt theValue) {
myName = theValue;
return this;
}
/**
* Sets the value for <b>name</b> (Name of sequencing system)
*
* <p>
* <b>Definition:</b>
* Name of sequencing system
* </p>
*/
public System setName( String theCode) {
myName = new CodeDt(theCode);
return this;
}
/**
* Gets the value(s) for <b>identity</b> (Id of sequencing system).
* creating it if it does
* not exist. Will not return <code>null</code>.
*
* <p>
* <b>Definition:</b>
* Id of sequencing system
* </p>
*/
public StringDt getIdentity() {
if (myIdentity == null) {
myIdentity = new StringDt();
}
return myIdentity;
}
/**
* Sets the value(s) for <b>identity</b> (Id of sequencing system)
*
* <p>
* <b>Definition:</b>
* Id of sequencing system
* </p>
*/
public System setIdentity(StringDt theValue) {
myIdentity = theValue;
return this;
}
/**
* Sets the value for <b>identity</b> (Id of sequencing system)
*
* <p>
* <b>Definition:</b>
* Id of sequencing system
* </p>
*/
public System setIdentity( String theString) {
myIdentity = new StringDt(theString);
return this;
}
}
/**
* Block class for child element: <b>SequencingLab.specimen</b> (Specimen of the lab)
*
* <p>
* <b>Definition:</b>
* Specimen of the lab
* </p>
*/
@Block(name="SequencingLab.specimen")
public static class Specimen extends BaseElement implements IResourceBlock {
@Child(name="type", type=CodeDt.class, order=0, min=1, max=1)
@Description(
shortDefinition="Class of the specimen",
formalDefinition="Whether the specimen is from germline or somatic cells of the patient"
)
private CodeDt myType;
@Child(name="source", type=CodeableConceptDt.class, order=1, min=0, max=1)
@Description(
shortDefinition="Source of specimen",
formalDefinition="Source of the specimen"
)
private CodeableConceptDt mySource;
@Override
public boolean isEmpty() {
return super.isBaseEmpty() && ca.uhn.fhir.util.ElementUtil.isEmpty( myType, mySource);
}
@Override
public java.util.List<IElement> getAllPopulatedChildElements() {
return getAllPopulatedChildElementsOfType(null);
}
@Override
public <T extends IElement> List<T> getAllPopulatedChildElementsOfType(Class<T> theType) {
return ca.uhn.fhir.util.ElementUtil.allPopulatedChildElements(theType, myType, mySource);
}
/**
* Gets the value(s) for <b>type</b> (Class of the specimen).
* creating it if it does
* not exist. Will not return <code>null</code>.
*
* <p>
* <b>Definition:</b>
* Whether the specimen is from germline or somatic cells of the patient
* </p>
*/
public CodeDt getType() {
if (myType == null) {
myType = new CodeDt();
}
return myType;
}
/**
* Sets the value(s) for <b>type</b> (Class of the specimen)
*
* <p>
* <b>Definition:</b>
* Whether the specimen is from germline or somatic cells of the patient
* </p>
*/
public Specimen setType(CodeDt theValue) {
myType = theValue;
return this;
}
/**
* Sets the value for <b>type</b> (Class of the specimen)
*
* <p>
* <b>Definition:</b>
* Whether the specimen is from germline or somatic cells of the patient
* </p>
*/
public Specimen setType( String theCode) {
myType = new CodeDt(theCode);
return this;
}
/**
* Gets the value(s) for <b>source</b> (Source of specimen).
* creating it if it does
* not exist. Will not return <code>null</code>.
*
* <p>
* <b>Definition:</b>
* Source of the specimen
* </p>
*/
public CodeableConceptDt getSource() {
if (mySource == null) {
mySource = new CodeableConceptDt();
}
return mySource;
}
/**
* Sets the value(s) for <b>source</b> (Source of specimen)
*
* <p>
* <b>Definition:</b>
* Source of the specimen
* </p>
*/
public Specimen setSource(CodeableConceptDt theValue) {
mySource = theValue;
return this;
}
}
}