Package net.imglib2.img.cell

Source Code of net.imglib2.img.cell.CellTest

/*
* #%L
* ImgLib2: a general-purpose, multidimensional image processing library.
* %%
* Copyright (C) 2009 - 2014 Stephan Preibisch, Tobias Pietzsch, Barry DeZonia,
* Stephan Saalfeld, Albert Cardona, Curtis Rueden, Christian Dietz, Jean-Yves
* Tinevez, Johannes Schindelin, Lee Kamentsky, Larry Lindsey, Grant Harris,
* Mark Hiner, Aivar Grislis, Martin Horn, Nick Perry, Michael Zinsmaier,
* Steffen Jaensch, Jan Funke, Mark Longair, and Dimiter Prodanov.
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
*    this list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright notice,
*    this list of conditions and the following disclaimer in the documentation
*    and/or other materials provided with the distribution.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
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* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
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package net.imglib2.img.cell;

import static org.junit.Assert.assertArrayEquals;
import static org.junit.Assert.assertTrue;
import net.imglib2.img.basictypeaccess.array.ArrayDataAccess;
import net.imglib2.img.basictypeaccess.array.ByteArray;
import net.imglib2.img.basictypeaccess.array.CharArray;
import net.imglib2.img.basictypeaccess.array.DoubleArray;
import net.imglib2.img.basictypeaccess.array.FloatArray;
import net.imglib2.img.basictypeaccess.array.IntArray;
import net.imglib2.img.basictypeaccess.array.ShortArray;
import net.imglib2.util.Fraction;

import org.junit.Test;

/**
* TODO
*
*/
public class CellTest
{
  int[][] dim = {
      { 10, 12 },
      { 200, 30, 2, 384 },
      { 12, 3, 4, 1, 9 }
  };

  long[][] offset = {
      { 0, 0 },
      { 0, 912389123123l, 1231238214214367l, 2 },
      { 321, 3, 1, 0, 0 }
  };

  int[] expectedLength = {
      120,
      4608000,
      1296
  };

  public < A extends ArrayDataAccess< A > > void testConstruction( final A creator )
  {
    for ( int i = 0; i < dim.length; ++i ) {
      final AbstractCell< A > cell = new DefaultCell< A >( creator, dim[ i ], offset[ i ], new Fraction( 2, 1 ) );
      assertTrue( creator.getClass().isInstance( cell.getData() ) );
      assertTrue( cell.size() == expectedLength[ i ] );
    }
  }

  @Test
  public void testByteConstruction()
  {
    testConstruction( new ByteArray( 1 ) );
  }

  @Test
  public void testCharConstruction()
  {
    testConstruction( new CharArray( 1 ) );
  }

  @Test
  public void testShortConstruction()
  {
    testConstruction( new ShortArray( 1 ) );
  }

  @Test
  public void testIntConstruction()
  {
    testConstruction( new IntArray( 1 ) );
  }

  @Test
  public void testFloatConstruction()
  {
    testConstruction( new FloatArray( 1 ) );
  }

  @Test
  public void testDoubleConstruction()
  {
    testConstruction( new DoubleArray( 1 ) );
  }

  @Test
  public void testLocalIndexCalculation()
  {
    final AbstractCell< FloatArray > cell = new DefaultCell< FloatArray >( new FloatArray( 1 ), new int[] {20, 8, 10}, new long[] { 0, 9876543210l, 222 } , new Fraction( 2, 1 ) );
    final long[][] position = { {3, 4, 5}, {12, 0, 3}, {3, 2, 0} };
    final int[] expectedIndex = { 883, 492, 43 };
    for ( int i = 0; i < position.length; ++i )
    {
      assertTrue( cell.localPositionToIndex( position[ i ] ) == expectedIndex[ i ] );
    }
  }

  @Test
  public void testGlobalPositionCalculation()
  {
    final AbstractCell< FloatArray > cell = new DefaultCell< FloatArray >( new FloatArray( 1 ), new int[] {20, 8, 10}, new long[] { 0, 9876543210l, 222 } , new Fraction( 2, 1 ) );
    final int[] index = { 883, 492, 43 };
    final long[][] expectedPosition = { { 3, 9876543214l, 227 }, { 12, 9876543210l, 225 }, { 3, 9876543212l, 222 } };
    for ( int i = 0; i < index.length; ++i )
    {
      final long[] position = new long[ 3 ];
      cell.indexToGlobalPosition( index[ i ], position );
      assertArrayEquals( expectedPosition[ i ], position );
      for ( int d = 0; d < position.length; ++d )
        assertTrue( cell.indexToGlobalPosition( index[ i ], d ) == expectedPosition[ i ][ d ] );
    }
  }
}
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