/*
* #%L
* ImgLib2: a general-purpose, multidimensional image processing library.
* %%
* Copyright (C) 2009 - 2014 Stephan Preibisch, Tobias Pietzsch, Barry DeZonia,
* Stephan Saalfeld, Albert Cardona, Curtis Rueden, Christian Dietz, Jean-Yves
* Tinevez, Johannes Schindelin, Lee Kamentsky, Larry Lindsey, Grant Harris,
* Mark Hiner, Aivar Grislis, Martin Horn, Nick Perry, Michael Zinsmaier,
* Steffen Jaensch, Jan Funke, Mark Longair, and Dimiter Prodanov.
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
* POSSIBILITY OF SUCH DAMAGE.
* #L%
*/
package net.imglib2.img.sparse;
import java.io.Serializable;
import net.imglib2.FlatIterationOrder;
import net.imglib2.img.AbstractNativeImg;
import net.imglib2.img.ImgFactory;
import net.imglib2.type.NativeType;
import net.imglib2.util.Fraction;
/**
* @author Tobias Pietzsch
*
*/
public final class NtreeImg< T extends NativeType< T >, A extends NtreeAccess< ?, A >> extends AbstractNativeImg< T, A > implements Serializable
{
/**
* TODO: remove with proper serialization
*/
private static final long serialVersionUID = 1L;
// final Ntree<?> ntree;
final A data;
public NtreeImg( final A data, final long[] dim, final Fraction entitiesPerPixel )
{
super( dim, entitiesPerPixel );
// this.ntree = new Ntree<Integer>(dimensions, 0);
this.data = data;
}
private NtreeImg( final NtreeImg< T, A > img )
{
super( img.dimension, new Fraction() );
// this.ntree = new Ntree<Integer>(img.dimension, 0);
this.data = img.data;
}
public static interface PositionProvider
{
long[] getPosition();
}
// updater is the RandomAccess / Cursor etc
// each call creates a new IntAccess wrapper
@Override
public A update( final Object updater )
{
return data.createInstance( ( ( PositionProvider ) updater ).getPosition() );
}
/*
* (non-Javadoc)
*
* @see net.imglib2.RandomAccessible#randomAccess()
*/
@Override
public NtreeRandomAccess< T > randomAccess()
{
return new NtreeRandomAccess< T >( this );
}
@Override
public NtreeCursor< T > cursor()
{
return new NtreeCursor< T >( this );
}
@Override
public NtreeCursor< T > localizingCursor()
{
return cursor();
}
@Override
public ImgFactory< T > factory()
{
return new NtreeImgFactory< T >();
}
@Override
public NtreeImg< T, A > copy()
{
// TODO: More efficient way to create a copy of the img
@SuppressWarnings( "unchecked" )
final NtreeImg< T, A > copy = ( NtreeImg< T, A > ) factory().create( dimension, firstElement().createVariable() );
final NtreeCursor< T > source = this.cursor();
final NtreeCursor< T > target = copy.cursor();
while ( source.hasNext() )
target.next().set( source.next() );
return copy;
}
@Override
public FlatIterationOrder iterationOrder()
{
return new FlatIterationOrder( this );
}
}