/**
* Copyright (C) 2012-2013 Selventa, Inc.
*
* This file is part of the OpenBEL Framework.
*
* This program is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* The OpenBEL Framework is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
* or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public
* License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with the OpenBEL Framework. If not, see <http://www.gnu.org/licenses/>.
*
* Additional Terms under LGPL v3:
*
* This license does not authorize you and you are prohibited from using the
* name, trademarks, service marks, logos or similar indicia of Selventa, Inc.,
* or, in the discretion of other licensors or authors of the program, the
* name, trademarks, service marks, logos or similar indicia of such authors or
* licensors, in any marketing or advertising materials relating to your
* distribution of the program or any covered product. This restriction does
* not waive or limit your obligation to keep intact all copyright notices set
* forth in the program as delivered to you.
*
* If you distribute the program in whole or in part, or any modified version
* of the program, and you assume contractual liability to the recipient with
* respect to the program or modified version, then you will indemnify the
* authors and licensors of the program for any liabilities that these
* contractual assumptions directly impose on those licensors and authors.
*/
package org.openbel.framework.common.bel.converters;
import static org.hamcrest.CoreMatchers.is;
import static org.junit.Assert.assertThat;
import static org.openbel.framework.common.BELUtilities.constrainedHashSet;
import static org.openbel.framework.common.BELUtilities.sizedArrayList;
import java.util.List;
import java.util.Set;
import org.junit.Test;
import org.openbel.bel.model.BELDocument;
import org.openbel.bel.model.BELDocumentHeader;
import org.openbel.bel.model.BELNamespaceDefinition;
import org.openbel.bel.model.BELStatement;
import org.openbel.bel.model.BELStatementGroup;
import org.openbel.framework.common.bel.converters.BELDocumentConverter;
import org.openbel.framework.common.model.Document;
import org.openbel.framework.common.model.NamespaceGroup;
/**
* {@link BELDocumentConverterTest} tests the conversion from the
* {@link BELDocument BEL model} to the {@link Document common document model}.
*
* @author Anthony Bargnesi {@code <abargnesi@selventa.com>}
*/
public class BELDocumentConverterTest {
private static final String DEFAULT_NS =
"http://resource.belframework.org/belframework/1.0/namespace/hgnc-approved-symbols.belns";
private static final String NS =
"http://resource.belframework.org/belframework/1.0/namespace/entrez-gene-ids-hmr.belns";
/**
* Tests the successful conversion of namespaces defined in the
* {@link BELDocument BEL} model. Specifically this tests the conversion
* treatment of both custom and default namespaces.
*/
@Test
public void testNamespaceGroupConversion() {
// setup test BELDocument with one default and one custom namespace
final BELDocumentHeader dh = new BELDocumentHeader("Unit Test",
"Unit Test", "1.0");
final Set<BELNamespaceDefinition> nsset = constrainedHashSet(2);
nsset.add(new BELNamespaceDefinition("HGNC", DEFAULT_NS, true));
nsset.add(new BELNamespaceDefinition("EGID", NS, false));
final List<BELStatementGroup> sglist = sizedArrayList(1);
final BELStatementGroup sg = new BELStatementGroup("Example");
sg.getStatements().add(new BELStatement("p(AKT1) => g(EGID:1024)"));
sglist.add(sg);
final BELDocument beldoc = new BELDocument(dh, null, nsset, sglist);
// convert to common model
final BELDocumentConverter converter = new BELDocumentConverter();
final Document doc = converter.convert(beldoc);
// validate namespace group
final NamespaceGroup nsgroup = doc.getNamespaceGroup();
assertThat("More than one custom namespace exists.", nsgroup
.getNamespaces().size(), is(1));
assertThat("The custom namespace does not match.", nsgroup
.getNamespaces().get(0).getResourceLocation(), is(NS));
assertThat("The default namespace does not match.",
nsgroup.getDefaultResourceLocation(), is(DEFAULT_NS));
}
}