/**
* Copyright (C) 2012-2013 Selventa, Inc.
*
* This file is part of the OpenBEL Framework.
*
* This program is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* The OpenBEL Framework is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
* or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public
* License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with the OpenBEL Framework. If not, see <http://www.gnu.org/licenses/>.
*
* Additional Terms under LGPL v3:
*
* This license does not authorize you and you are prohibited from using the
* name, trademarks, service marks, logos or similar indicia of Selventa, Inc.,
* or, in the discretion of other licensors or authors of the program, the
* name, trademarks, service marks, logos or similar indicia of such authors or
* licensors, in any marketing or advertising materials relating to your
* distribution of the program or any covered product. This restriction does
* not waive or limit your obligation to keep intact all copyright notices set
* forth in the program as delivered to you.
*
* If you distribute the program in whole or in part, or any modified version
* of the program, and you assume contractual liability to the recipient with
* respect to the program or modified version, then you will indemnify the
* authors and licensors of the program for any liabilities that these
* contractual assumptions directly impose on those licensors and authors.
*/
package org.openbel.framework.common.xbel.converters;
import static org.openbel.framework.common.enums.AnnotationType.REGULAR_EXPRESSION;
import java.util.List;
import org.openbel.bel.xbel.model.XBELInternalAnnotationDefinition;
import org.openbel.bel.xbel.model.XBELListAnnotation;
import org.openbel.framework.common.enums.AnnotationType;
import org.openbel.framework.common.model.AnnotationDefinition;
/**
* Converter class for converting between
* {@link XBELInternalAnnotationDefinition} and {@link AnnotationDefinition}.
*/
public class InternalAnnotationDefinitionConverter extends
JAXBConverter<XBELInternalAnnotationDefinition, AnnotationDefinition> {
/**
* {@inheritDoc}
*/
@Override
public XBELInternalAnnotationDefinition convert(AnnotationDefinition t) {
if (t == null || t.getURL() != null) {
return null;
}
XBELInternalAnnotationDefinition dest =
new XBELInternalAnnotationDefinition();
String description = t.getDescription();
String id = t.getId();
String usage = t.getUsage();
// If null, set equal to an empty string so that the document can be properly converted.
if (description == null) description = "";
if (usage == null) usage = "";
dest.setDescription(description);
dest.setId(id);
dest.setUsage(usage);
AnnotationType type = t.getType();
String value = t.getValue();
switch (type) {
case ENUMERATION:
List<String> enums = t.getEnums();
XBELListAnnotation xla = new XBELListAnnotation();
List<String> xlaval = xla.getListValue();
xlaval.addAll(enums);
dest.setListAnnotation(xla);
break;
case REGULAR_EXPRESSION:
dest.setPatternAnnotation(value);
break;
default:
throw new UnsupportedOperationException("unknown type: " + type);
}
return dest;
}
/**
* {@inheritDoc}
*/
@Override
public AnnotationDefinition convert(XBELInternalAnnotationDefinition t) {
if (t == null) {
return null;
}
String desc = t.getDescription();
String id = t.getId();
String use = t.getUsage();
AnnotationDefinition dest = null;
if (t.isSetListAnnotation()) {
XBELListAnnotation listAnnotation = t.getListAnnotation();
List<String> vals = listAnnotation.getListValue();
dest = new AnnotationDefinition(id, desc, use, vals);
} else if (t.isSetPatternAnnotation()) {
String regex = t.getPatternAnnotation();
dest = new AnnotationDefinition(id, REGULAR_EXPRESSION, desc, use);
dest.setValue(regex);
} else {
throw new UnsupportedOperationException("unhandled");
}
return dest;
}
}