package org.exist.fluent;
import java.io.File;
import java.text.MessageFormat;
import java.util.*;
import org.apache.log4j.Logger;
import org.exist.EXistException;
import org.exist.backup.*;
import org.exist.collections.*;
import org.exist.collections.Collection;
import org.exist.dom.*;
import org.exist.security.*;
import org.exist.security.xacml.AccessContext;
import org.exist.storage.*;
import org.exist.storage.lock.Lock;
import org.exist.storage.sync.Sync;
import org.exist.storage.txn.TransactionManager;
import org.exist.util.*;
import org.exist.xmldb.XmldbURI;
import org.exist.xquery.*;
import org.exist.xquery.value.*;
/**
* <p>The global entry point to an embedded instance of the <a href='http://exist-db.org'>eXist </a>database.
* The static methods on this class control the lifecycle of the database connection. It follows that
* there can be only one embedded database running in the JVM (or rather one per classloader, but
* that would probably be a bit confusing). To gain access to the contents of the database, you
* need to acquire a handle instance by logging in. All operations performed based on that instance
* will be executed using the permissions of the user associated with that instance. You can have
* any number of instances (including multiple ones for the same user), but cannot mix resources
* obtained from different instances. There is no need to explicitly release instances.</p>
*
* <p>Here's a short example of how to start up the database, perform a query, and shut down:
* <pre> Database.startup(new File("conf.xml"));
* Database db = Database.login("admin", "passwd");
* for (String name : db.getFolder("/").query().all("//user/@name").values())
* System.out.println("user: " + name);
* Database.shutdown();</pre></p>
*
* @author <a href="mailto:piotr@ideanest.com">Piotr Kaminski</a>
* @version $Revision: 1.26 $ ($Date: 2006/09/04 06:09:05 $)
*/
public class Database {
private static final Logger LOG = Logger.getLogger(Database.class);
/**
* Start up the database, configured using the given config file. This method must be
* called precisely once before making use of any facilities offered in this package. The
* configuration file is typically called 'conf.xml' and you can find a sample one in the root
* directory of eXist's distribution.
*
* @param configFile the config file that specifies the database to use
* @throws IllegalStateException if the database has already been started
*/
public static void startup(File configFile) {
try {
if (isStarted()) throw new IllegalStateException("database already started");
configFile = configFile.getAbsoluteFile();
Configuration config = new Configuration(configFile.getName(), configFile.getParentFile().getAbsolutePath());
BrokerPool.configure(dbName, 1, 5, config);
pool = BrokerPool.getInstance(dbName);
txManager = pool.getTransactionManager();
configureRootCollection(configFile);
defragmenter.start();
QueryService.statistics().reset();
} catch (DatabaseConfigurationException e) {
throw new DatabaseException(e);
} catch (EXistException e) {
throw new DatabaseException(e);
}
}
static void configureRootCollection(File configFile) {
Database db = new Database(pool.getSecurityManager().getSystemSubject());
StringBuilder configXml = new StringBuilder();
configXml.append("<collection xmlns='http://exist-db.org/collection-config/1.0'>");
configXml.append(ListenerManager.getTriggerConfigXml());
{
XMLDocument configDoc = db.getFolder("/").documents().load(Name.generate(db), Source.xml(configFile));
Node indexNode = configDoc.query().optional("/exist/indexer/index").node();
if (indexNode.extant()) configXml.append(indexNode.toString());
configDoc.delete();
}
configXml.append("</collection>");
// If the config is already *exactly* how we want it, no need to reload and reindex.
try {
Node currentConfig =
db.getFolder(XmldbURI.CONFIG_COLLECTION + Database.ROOT_PREFIX).documents()
.get(CollectionConfiguration.DEFAULT_COLLECTION_CONFIG_FILE).xml().root();
if (currentConfig.query().presub().single("deep-equal(., $1)", configXml.toString()).booleanValue()) return;
} catch (DatabaseException e) {
// fall through
}
// Now force reload and reindex so it'll pick up the new settings.
Transaction tx = db.requireTransactionWithBroker();
try {
pool.getConfigurationManager().addConfiguration(tx.tx, tx.broker, tx.broker.getCollection(XmldbURI.ROOT_COLLECTION_URI), configXml.toString());
tx.commit();
DBBroker broker = db.acquireBroker();
try {
broker.reindexCollection(XmldbURI.ROOT_COLLECTION_URI);
} finally {
db.releaseBroker(broker);
}
} catch (PermissionDeniedException e) {
throw new DatabaseException(e);
} catch (CollectionConfigurationException e) {
throw new DatabaseException(e);
} finally {
tx.abortIfIncomplete();
}
}
/**
* Shut down the database connection. If the database is not started, do nothing.
*/
public static void shutdown() {
if (pool == null) return;
defragmenter.stop();
pool.shutdown();
pool = null;
}
/**
* Ensure the database is started. If the database is not started, start it with the
* given config file. If it is already started, make sure it was started with the same
* config file.
*
* @param configFile the config file that specifies the database to use
* @throws IllegalStateException if the database was already started with a different config file
*
* @deprecated Please use a combination of {@link #isStarted()} and {@link #startup(File)}.
*/
@Deprecated public static void ensureStarted(File configFile) {
if (isStarted()) {
String currentPath = pool.getConfiguration().getConfigFilePath();
if (!configFile.getAbsoluteFile().equals(new File(currentPath).getAbsoluteFile()))
throw new IllegalStateException("database already started with different configuration " + currentPath);
} else {
startup(configFile);
}
}
/**
* Return whether the database has been started and is currently running in this JVM. This will
* be the case if {@link #startup(File)} or {@link #ensureStarted(File)} was previously called
* successfully and {@link #shutdown()} was not yet called.
*
* @return <code>true</code> if the database has been started with any configuration file
*/
public static boolean isStarted() {
return BrokerPool.isConfigured(dbName);
}
/**
* Flush the contents of the database to disk. This ensures that all transactions are written out
* and the state of the database is synced. It shouldn't be necessary any more with the newly
* implemented transaction recovery and this method will probably be deprecated in the future.
*/
public static void flush() {
if (!BrokerPool.isConfigured(dbName)) throw new IllegalStateException("database not started");
try {
DBBroker broker = pool.get(pool.getSecurityManager().getSystemSubject());
try {
broker.flush();
broker.sync(Sync.MAJOR_SYNC);
} finally {
pool.release(broker);
}
} catch (EXistException e) {
throw new DatabaseException(e);
}
}
/**
* Verify the internal consistency of the database's data structures. Log a fatal message if the
* database is corrupted, as well as error-level messages for all the problems found. If the
* database is corrupted, you can try using admin tools to reindex it, or back it up and restore
* it. However, there's a good chance it's unrecoverable.
*
* @return <code>true</code> if the database's internal data structures are consistent,
* <code>false</code> if the database is corrupted
*/
public static boolean checkConsistency() {
synchronized(pool) {
try {
DBBroker broker = pool.enterServiceMode(pool.getSecurityManager().getSystemSubject());
try {
List<ErrorReport> errors = new ConsistencyCheck(broker, false, false).checkAll(NULL_PROGRESS_CALLBACK);
if (errors.isEmpty()) return true;
LOG.fatal("database corrupted");
for (ErrorReport error : errors) LOG.error(error.toString().replace("\n", " "));
return false;
} finally {
pool.exitServiceMode(pool.getSecurityManager().getSystemSubject());
}
} catch (TerminatedException e) {
throw new DatabaseException(e);
} catch (PermissionDeniedException e) {
throw new DatabaseException(e);
}
}
}
private static final ConsistencyCheck.ProgressCallback NULL_PROGRESS_CALLBACK = new ConsistencyCheck.ProgressCallback() {
public void error(ErrorReport error) {}
public void startCollection(String path) {}
public void startDocument(String name, int current, int count) {}
};
/**
* Login to obtain access to the database. The password should be passed in the clear.
* If a user does not have a password set, pass in <code>null</code>.
* Note that all newly created databases have a user <code>admin</code> with no password set.
*
* @param username the username of the user being logged in
* @param password the password corresponding to that user name, or <code>null</code> if none
* @return an instance of the database configured for access by the given user
* @throws DatabaseException if the user could not be logged in
*/
public static Database login(String username, String password) {
Subject user;
try {
user = pool.getSecurityManager().authenticate(username, password);
} catch (AuthenticationException e) {
throw new DatabaseException(e.getMessage(),e);
}
return new Database(user);
}
/**
* Get database if was already login in current thread.
*
* @return an instance of the database configured for access
* @throws DatabaseException if the user could not be logged in
*/
public static Database current() throws DatabaseException {
if (pool == null) {
//if (isStarted()) throw new IllegalStateException("database already started");
try {
pool = BrokerPool.getInstance(dbName);
txManager = pool.getTransactionManager();
//configureRootCollection(configFile);
//defragmenter.start();
//QueryService.statistics().reset();
} catch (EXistException e) {
throw new DatabaseException(e);
}
}
DBBroker broker;
try {
broker = pool.getActiveBroker();
} catch (Throwable e) {
throw new DatabaseException(e);
}
return new Database( broker.getSubject() );
}
/**
* Remove the given listener from all trigger points on all sources.
*
* @param listener the listener to remove
*/
public static void remove(Listener listener) {
ListenerManager.INSTANCE.remove(listener);
}
static String normalizePath(String path) {
if (path.startsWith(ROOT_PREFIX)) {
path = path.equals(ROOT_PREFIX) ? "/" : path.substring(Database.ROOT_PREFIX.length());
}
return path;
}
private static String dbName = "exist";
public static final String ROOT_PREFIX = XmldbURI.ROOT_COLLECTION;
private static volatile BrokerPool pool;
private static TransactionManager txManager;
private static final ThreadLocal<Transaction> localTransaction = new ThreadLocal<Transaction>();
private static final WeakHashMap<NativeBroker,Boolean> instrumentedBrokers = new WeakHashMap<NativeBroker,Boolean>();
private final Subject user;
private final NamespaceMap namespaceBindings;
String defaultCharacterEncoding = "UTF-8";
Database(Subject user) {
this.user = user;
this.namespaceBindings = new NamespaceMap();
}
Database(Database parent, NamespaceMap namespaceBindings) {
this.user = parent.user;
this.namespaceBindings = namespaceBindings.extend();
}
/**
* @deprecated Renamed to {@link #setDefaultCharacterEncoding(String)}.
*/
@Deprecated public void setDefaultExportEncoding(String encoding) {
setDefaultCharacterEncoding(encoding);
}
/**
* Set the default character encoding to be used when exporting XML files from the database.
* If not explicitly set, it defaults to UTF-8.
*
* @param encoding
*/
public void setDefaultCharacterEncoding(String encoding) {
defaultCharacterEncoding = encoding;
}
DBBroker acquireBroker() {
try {
NativeBroker broker = (NativeBroker) pool.get(user);
if (instrumentedBrokers.get(broker) == null) {
broker.addContentLoadingObserver(contentObserver);
instrumentedBrokers.put(broker, Boolean.TRUE);
}
return broker;
} catch (EXistException e) {
throw new DatabaseException(e);
}
}
void releaseBroker(DBBroker broker) {
pool.release(broker);
}
/**
* Return the namespace bindings for this database instance. They will be inherited by
* all resources derived from this instance.
*
* @return the namespace bindings for this database instance
*/
public NamespaceMap namespaceBindings() {
return namespaceBindings;
}
private Sequence adoptInternal(Object o) {
DBBroker broker = acquireBroker();
try {
XQueryContext context = broker.getXQueryService().newContext(AccessContext.INTERNAL_PREFIX_LOOKUP);
context.declareNamespaces(namespaceBindings.getCombinedMap());
context.setBackwardsCompatibility(false);
context.setStaticallyKnownDocuments(DocumentSet.EMPTY_DOCUMENT_SET);
return XPathUtil.javaObjectToXPath(o, context, true);
} catch (XPathException e) {
throw new DatabaseException(e);
} finally {
releaseBroker(broker);
}
}
public ItemList adopt(org.w3c.dom.Node node) {
// this works for DocumentFragments too, they'll be automatically expanded
return new ItemList(adoptInternal(node), namespaceBindings.extend(), this);
}
/**
* Check whether the database contains a document or a folder with the given absolute path.
*
* @param path the absolute path of the document or folder to check
* @return <code>true</code> if there is a document or folder at the given path, <code>false</code> otherwise
*/
public boolean contains(String path) {
if (path.length() == 0) throw new IllegalArgumentException("empty path: " + path);
if (path.equals("/")) return true;
if (!path.startsWith("/")) throw new IllegalArgumentException("path not absolute: " + path);
if (path.endsWith("/")) throw new IllegalArgumentException("path ends with '/': " + path);
int i = path.lastIndexOf('/');
assert i != -1;
DBBroker broker = acquireBroker();
try {
if (broker.getCollection(XmldbURI.create(path)) != null) return true;
String folderPath = path.substring(0, i);
String name = path.substring(i+1);
Collection collection = broker.openCollection(XmldbURI.create(folderPath), Lock.NO_LOCK);
if (collection == null) return false;
return collection.getDocument(broker, XmldbURI.create(name)) != null;
} catch(PermissionDeniedException pde) {
throw new DatabaseException(pde.getMessage(), pde);
} finally {
releaseBroker(broker);
}
}
/**
* Get the document for the given absolute path. Namespace bindings will be inherited
* from this database.
*
* @param path the absolute path of the desired document
* @return the document at the given path
* @throws DatabaseException if the document is not found or something else goes wrong
*/
public Document getDocument(String path) {
if (path.length() == 0) throw new IllegalArgumentException("empty document path: " + path);
if (!path.startsWith("/")) throw new IllegalArgumentException("document path not absolute: " + path);
if (path.endsWith("/")) throw new IllegalArgumentException("document path ends with '/': " + path);
int i = path.lastIndexOf('/');
assert i != -1;
return getFolder(i == 0 ? "/" : path.substring(0, i)).documents().get(path.substring(i+1));
}
/**
* Get the folder for the given path. Namespace mappings will be inherited from this
* database.
*
* @param path the address of the desired collection
* @return a collection bound to the given path
* @throws DatabaseException if the path does not identify a valid collection
*/
public Folder getFolder(String path) {
return new Folder(path, false, namespaceBindings.extend(), this);
}
/**
* Create the folder for the given path. Namespace mappings will be inherited from this
* database. If the folder does not exist, it is created along with all required ancestors.
*
* @param path the address of the desired collection
* @return a collection bound to the given path
*/
public Folder createFolder(String path) {
return new Folder(path, true, namespaceBindings.extend(), this);
}
/**
* Return a query service that runs queries over the given list of resources.
* The resources can be of different kinds, and come from different locations in the
* folder hierarchy. The service will inherit the database's namespace bindings,
* rather than the bindings of any given context resource.
*
* @param context the arbitrary collection of database objects over which to query
* @return a query service over the given resources
*/
public QueryService query(Resource... context) {
return query(Arrays.asList(context));
}
/**
* Return a query service that runs queries over the given list of resources.
* The resources can be of different kinds, and come from different locations in the
* folder hierarchy. The service will inherit the database's namespace bindings,
* rather than the bindings of any given context resource.
*
* @param context the arbitrary collection of database objects over which to query;
* the collection is not copied, and the collection's contents are re-read every time the query is performed
* @return a query service over the given resources
*/
public QueryService query(final java.util.Collection<? extends Resource> context) {
return new QueryService(getFolder("/")) {
@Override void prepareContext(DBBroker broker) {
MutableDocumentSet mdocs = new DefaultDocumentSet();
base = new ValueSequence();
for (Resource res : context) {
QueryService qs = res.query();
if (qs.docs != null) mdocs.addAll(qs.docs);
if (qs.base != null) try {
base.addAll(qs.base);
} catch (XPathException e) {
throw new DatabaseException("unexpected item type conflict", e);
}
}
docs = mdocs;
}
};
}
/**
* Return a transaction for use with database operations. If a transaction is already in progress
* then join it, otherwise begin a new one. If a transaction is joined, calling <code>commit</code>
* or <code>abort</code> on the returned instance will have no effect; only the outermost
* transaction object can do this.
*
* @return a transaction object
*/
static Transaction requireTransaction() {
Transaction t = localTransaction.get();
return t == null ? new Transaction(txManager, null) : new Transaction(t, null);
}
Transaction requireTransactionWithBroker() {
Transaction t = localTransaction.get();
return t == null ? new Transaction(txManager, this) : new Transaction(t, this);
}
void checkSame(Resource o) {
// allow other resource to be a NULL, as those are safe and database-neutral
if (!(o.database() == null || o.database().user == this.user)) throw new IllegalArgumentException("cannot combine objects from two database instances in one operation");
}
private static final WeakMultiValueHashMap<String, StaleMarker> staleMap = new WeakMultiValueHashMap<String, StaleMarker>();
private static void stale(String key) {
int updated = 0;
synchronized(staleMap) {
for (StaleMarker value : staleMap.get(key)) {value.mark(); updated++;}
staleMap.remove(key);
}
}
static void trackStale(String key, StaleMarker value) {
staleMap.put(normalizePath(key), value);
}
private static final ContentLoadingObserver contentObserver = new ContentLoadingObserver() {
public void dropIndex(Collection collection) {
stale(normalizePath(collection.getURI().getCollectionPath()));
}
public void dropIndex(DocumentImpl doc) throws ReadOnlyException {
stale(normalizePath(doc.getURI().getCollectionPath()));
}
public void removeNode(StoredNode node, NodePath currentPath, String content) {
stale(normalizePath(((DocumentImpl) node.getOwnerDocument()).getURI().getCollectionPath()) + "#" + node.getNodeId());
}
public void flush() {}
public void setDocument(DocumentImpl document) {}
public void storeAttribute(AttrImpl node, NodePath currentPath, int indexingHint, RangeIndexSpec spec, boolean remove) {}
public void storeText(TextImpl node, NodePath currentPath, int indexingHint) {}
public void sync() {}
public void printStatistics() {}
public boolean close() {return true;}
public void remove() {}
public void closeAndRemove() {
// TODO: do nothing OK here? indexes just got wiped and recreated, and this listener
// was removed...
}
};
static void queueDefrag(DocumentImpl doc) {
defragmenter.queue(doc);
}
private static final Defragmenter defragmenter = new Defragmenter();
private static class Defragmenter implements Runnable {
private static final Logger LOG = Logger.getLogger("org.exist.fluent.Database.defragmenter");
private static final long DEFRAG_INTERVAL = 10000; // ms
private Set<DocumentImpl> docsToDefrag = new TreeSet<DocumentImpl>();
private Thread thread;
public void start() {
if (thread != null) return;
thread = new Thread(this, "Database defragmenter");
thread.setPriority(Thread.NORM_PRIORITY-3);
thread.setDaemon(true);
thread.start();
}
public void stop() {
if (thread == null) return;
thread.interrupt();
try {
thread.join();
} catch (InterruptedException e) {
// oh well
}
thread = null;
}
public synchronized void queue(DocumentImpl doc) {
docsToDefrag.add(doc);
}
public void run() {
while(true) {
try {
Thread.sleep(DEFRAG_INTERVAL);
} catch (InterruptedException e) {
break;
}
// Grab copy of docsToDefrag to avoid potential deadlocks (if an executing query has a lock on
// the document we want to defrag, we block, then if it tries to queue another document for
// defrag it blocks, and it's deadlock time).
Set<DocumentImpl> docsToDefragCopy;
synchronized(this) {
LOG.debug(new MessageFormat(
"checking for documents to defragment, {0,choice,0#no candidates|1#1 candidate|1<{0,number,integer} candidates}")
.format(new Object[] {docsToDefrag.size()}));
docsToDefragCopy = docsToDefrag;
docsToDefrag = new TreeSet<DocumentImpl>();
}
int count = 0;
try {
DBBroker broker = pool.get(pool.getSecurityManager().getSystemSubject());
try {
Integer fragmentationLimitObject = broker.getBrokerPool().getConfiguration().getInteger(DBBroker.PROPERTY_XUPDATE_FRAGMENTATION_FACTOR);
int fragmentationLimit = fragmentationLimitObject == null ? 0 : fragmentationLimitObject;
for (Iterator<DocumentImpl> it = docsToDefragCopy.iterator(); it.hasNext(); ) {
DocumentImpl doc = it.next();
if (doc.getMetadata().getSplitCount() <= fragmentationLimit) {
it.remove();
} else {
// Must hold write lock on doc before checking stale map to avoid race condition
if (doc.getUpdateLock().attempt(Lock.WRITE_LOCK)) try {
String docPath = normalizePath(doc.getURI().getCollectionPath());
if (!staleMap.containsKey(docPath)) {
LOG.debug("defragmenting " + docPath);
count++;
Transaction tx = Database.requireTransaction();
try {
broker.defragXMLResource(tx.tx, doc);
tx.commit();
it.remove();
} finally {
tx.abortIfIncomplete();
}
}
} finally {
doc.getUpdateLock().release(Lock.WRITE_LOCK);
}
}
}
} finally {
pool.release(broker);
}
} catch (EXistException e) {
LOG.error("unable to get broker with system privileges to defragment documents", e);
}
LOG.debug(new MessageFormat(
"defragmented {0,choice,0#0 documents|1#1 document|1<{0,number,integer} documents}, next cycle in {1,number,integer}s")
.format(new Object[] {count, DEFRAG_INTERVAL / 1000}));
}
}
}
@SuppressWarnings("unchecked")
static <T> Iterator<T> emptyIterator() {
return EMPTY_ITERATOR;
}
@SuppressWarnings("unchecked")
static final Iterator EMPTY_ITERATOR = new Iterator() {
public boolean hasNext() {return false;}
public Object next() {throw new NoSuchElementException();}
public void remove() {throw new UnsupportedOperationException();}
};
@SuppressWarnings("unchecked")
static final Iterable EMPTY_ITERABLE = new Iterable() {
public Iterator iterator() {return EMPTY_ITERATOR;}
};
}