/*
* Copyright (c) 2012 The Broad Institute
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the
* Software is furnished to do so, subject to the following
* conditions:
*
* The above copyright notice and this permission notice shall be
* included in all copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
* EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
* OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
* NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
* HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
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* THE USE OR OTHER DEALINGS IN THE SOFTWARE.
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package org.broadinstitute.gatk.engine.datasources.reads;
import org.broadinstitute.gatk.engine.datasources.reads.LocusShard;
import org.broadinstitute.gatk.engine.datasources.reads.SAMReaderID;
import org.broadinstitute.gatk.engine.resourcemanagement.ThreadAllocation;
import org.broadinstitute.gatk.utils.GenomeLoc;
import org.broadinstitute.gatk.engine.datasources.reads.SAMDataSource;
import org.broadinstitute.gatk.utils.GenomeLocParser;
import java.util.List;
import java.util.Collections;
/**
* A mock locus shard, usable for infrastructure that requires a shard to behave properly.
*
* @author mhanna
* @version 0.1
*/
public class MockLocusShard extends LocusShard {
public MockLocusShard(final GenomeLocParser genomeLocParser,final List<GenomeLoc> intervals) {
super( genomeLocParser,
new SAMDataSource(Collections.<SAMReaderID>emptyList(),new ThreadAllocation(),null,genomeLocParser),
intervals,
null);
}
}