/*
* Copyright (c) 2012. The Genome Analysis Centre, Norwich, UK
* MISO project contacts: Robert Davey, Mario Caccamo @ TGAC
* *********************************************************************
*
* This file is part of MISO.
*
* MISO is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* MISO is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with MISO. If not, see <http://www.gnu.org/licenses/>.
*
* *********************************************************************
*/
package uk.ac.bbsrc.tgac.miso.core.test;
import org.junit.After;
import org.junit.Before;
import org.junit.Test;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import uk.ac.bbsrc.tgac.miso.core.data.Library;
import uk.ac.bbsrc.tgac.miso.core.data.Plate;
import uk.ac.bbsrc.tgac.miso.core.data.Project;
import uk.ac.bbsrc.tgac.miso.core.data.impl.*;
import uk.ac.bbsrc.tgac.miso.core.factory.DataObjectFactory;
import uk.ac.bbsrc.tgac.miso.core.factory.TgacDataObjectFactory;
import uk.ac.bbsrc.tgac.miso.core.service.plate.Default384WellPlateConversionStrategy;
import uk.ac.bbsrc.tgac.miso.core.service.plate.PlateConversionStrategy;
import java.util.LinkedList;
import java.util.List;
/**
* uk.ac.bbsrc.tgac.miso.core.test
* <p/>
* Info
*
* @author Rob Davey
* @date 13-Sep-2011
* @since 0.1.1
*/
public class PlateTests {
protected static final Logger log = LoggerFactory.getLogger(PlateTests.class);
private DataObjectFactory dataObjectFactory;
@Before
public void setUp() {
dataObjectFactory = new TgacDataObjectFactory();
}
@Test
public void testConstructPlates() {
uk.ac.bbsrc.tgac.miso.core.data.Plate p = dataObjectFactory.getPlateOfSize(96);
log.info(p.getElementType().getName());
}
@Test
public void test384WellPlateConversion() {
log.info("Generating plates and libraries");
List<_96WellPlate> plates = new LinkedList<_96WellPlate>();
for (int p = 1; p < 5; p++) {
_96WellPlate plate = new _96WellPlate();
for (int i = 1; i < 97; i++) {
Library l = new LibraryImpl();
l.setAlias("P"+p+"_L"+i+"_TestLib");
plate.addElement(l);
}
plates.add(plate);
}
_384WellPlate finalPlate = new _384WellPlate();
finalPlate.setName("Test 384 Plate");
PlateConversionStrategy<_96WellPlate> pcs = new Default384WellPlateConversionStrategy();
finalPlate.setConversionStrategy(pcs);
log.info("Doing conversion from 4x 96-well to 1x 384-well");
finalPlate.setElementsAndDoConversion(plates);
System.out.println(finalPlate.toString());
}
@After
public void tearDown() {
dataObjectFactory = null;
}
}